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Database: UniProt
Entry: J3MP59_ORYBR
LinkDB: J3MP59_ORYBR
Original site: J3MP59_ORYBR 
ID   J3MP59_ORYBR            Unreviewed;      1675 AA.
AC   J3MP59;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   24-JAN-2024, entry version 58.
DE   RecName: Full=RING-type domain-containing protein {ECO:0008006|Google:ProtNLM};
OS   Oryza brachyantha (malo sina).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB07G31910.1};
RN   [1] {ECO:0000313|EnsemblPlants:OB07G31910.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB07G31910.1};
RX   PubMed=23481403;
RA   Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA   Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA   Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA   An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA   Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA   Chen M.;
RT   "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT   Oryza genome evolution.";
RL   Nat. Commun. 4:1595-1595(2013).
RN   [2] {ECO:0000313|EnsemblPlants:OB07G31910.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (APR-2013) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC       {ECO:0000256|ARBA:ARBA00008438}.
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DR   STRING; 4533.J3MP59; -.
DR   EnsemblPlants; OB07G31910.1; OB07G31910.1; OB07G31910.
DR   Gramene; OB07G31910.1; OB07G31910.1; OB07G31910.
DR   eggNOG; KOG0298; Eukaryota.
DR   HOGENOM; CLU_001726_2_0_1; -.
DR   OMA; QLFEQMC; -.
DR   Proteomes; UP000006038; Chromosome 7.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   CDD; cd18070; DEXQc_SHPRH; 1.
DR   CDD; cd15517; PHD_TCF19_like; 1.
DR   CDD; cd18793; SF2_C_SNF; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 2.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR048686; SHPRH_helical_1st.
DR   InterPro; IPR048695; SHPRH_helical_2nd.
DR   InterPro; IPR038718; SNF2-like_sf.
DR   InterPro; IPR000330; SNF2_N.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR45865:SF1; E3 UBIQUITIN-PROTEIN LIGASE SHPRH; 1.
DR   PANTHER; PTHR45865; E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF21325; SHPRH_helical-1st; 1.
DR   Pfam; PF21324; SHPRH_helical-2nd; 1.
DR   Pfam; PF00176; SNF2-rel_dom; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SMART; SM00249; PHD; 1.
DR   SMART; SM00184; RING; 1.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   SUPFAM; SSF57850; RING/U-box; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   3: Inferred from homology;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00175}.
FT   DOMAIN          460..653
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   DOMAIN          1359..1408
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   DOMAIN          1451..1627
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
FT   REGION          1..38
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1634..1656
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1675 AA;  188661 MW;  DD3AFBE3E74B00E0 CRC64;
     MGRRKSRPAR AGGLGAGAAA EPDAPSPSXX XASKSRRAAK GEARRDVCFE VDSSTWCLSD
     GDRRDLAELV MRDVRISGEG EEALDVAALY EAGREKRFPL RLRVRDAPEE GFRLGNWPVV
     PSDCVILEYV VAGMVISGCF DGPDEGVSGL AHLVKLRFVT LRVHAFNVSQ SGDSVSVVSF
     RVRLGVMEKA FAACESLLEV TRHPWRKSLM NMVAWVRPEV MTSTAIYGMD GPVLPINGDA
     NGDFTPKKDS QFDLAALYEA IKPSMEAGLF EEELADLLPH LRPYQLRAAN WMVQREKGNT
     MVSSPNQQYV HSAPYCVPID FMHKNSRMFF NPFNGNVSMH PEPSPPYVSG GILADEMGLG
     KTVELLACIF AHRRPYSAGY SVSSNIKGTY QIKRHKRERV ECICGAASVT SAYQGIWIQC
     DICDAWQHAS CVGYSPKEEM HFSDDNGDAA ANNEQGTIKS KIKRKKKDKY CTAETEEKYI
     CTLCLELIEA AQSNILSHAT LIVCPSPILA QWHSEITRHT RPGSLKVYIY EGARNLDLPS
     TQKIDMAEIS TCDIVLTTYD VLKEDLSHDS DRHDGDRCFL RYQKKYPVTP TVLTRVHWWR
     LCLDEAQMVE SSRTSVTEMA MRLNAQHRWC ITGTPIQHRL DDLFGLLRFL RTSPFDTYRW
     WADIIRDPYE KGDTIAMNYT HKFFKEIMWR SSKIHVSQEL QLPPQEECFS WLIFSSIEEY
     FYQKQHATCM DHAHEIIRRI RNDANKREPI SDSSVVSNVY LSNDDIAKLL VPLLKLRQAC
     CHPQVGSSGL CSLQRTPLSM GEILQVLIGK AKVEGEEELR KIVVALNGLA GLAVIEQKNQ
     EAISLYKEAL ALACENFDDF RVDPLLNLHI NHNLAELLRD SSEYLQECPL KEQTFEAHGG
     RKRKETSPVD SDMCGIKRTK MCENSRSSLM TDSPETSKED ENIDAQVCKN REMDVENDSG
     CHSSSVCLAD SCLKKTCNSI REKYLSVFTS KLLIAQKDFS ASFTEVSTLS TELQNQNMNW
     WLYALDCIEQ NKDSADELIR KIDISSNKST TGLGSTGMVQ TISGLKYTIQ AGIDSLQSSR
     QQLMHRLLEL DKTMDNPKDE DIECHRYCPN CYDGNGSLCI QCELDELFQA YEARLFLVKK
     SNNDSVIASV EEAQDLQRRK YELNHFFRNT KTNEGSEPGD ENKNPRFARE NIQVYRHPSR
     IETSLKVIRT HSKTIMGEQY AKTAKKHLLL FEAMRKEFPQ ARNLSIAQNQ LLRAHDEIKM
     SLSRLQLKEN DDEPSAVNIV TREELIPYNV QFTSDKFLSL SSLARIRGQL RYLKGLVLCN
     KKTLRKHGES LPELGNCAAM ATSFAATGQT VSDTSNESCP ICQEKLLDQK MVFQCGHSVC
     CKCCLYMTEQ AAAHFGRSKK WIMCPTCRQR TDLENIAFVV ENKRENADRE VEDLAERAIS
     VQGSYGTKIE AVTRRILRIT STDGAAKILV FSSWNDVLDV LEHSLAANNL SYVRMKGGRK
     SQAALSQFKG LAGSISGERA KKSFSKMQPV QVLLMLIQHG ANGLNLLEAQ HVILVEPLLN
     PAAEAQAISR IHRVGQDKNT FIHRFIVKNT IEESIYKLNR GRAVCSTIHR KSKNFKDELV
     LTLKDIESLF PMVASDQPSE QEDKNQGGHL RSLPPSIAAG LAAERRSLVQ HDNLH
//
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