ID J3MP59_ORYBR Unreviewed; 1675 AA.
AC J3MP59;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 24-JAN-2024, entry version 58.
DE RecName: Full=RING-type domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB07G31910.1};
RN [1] {ECO:0000313|EnsemblPlants:OB07G31910.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB07G31910.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB07G31910.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR STRING; 4533.J3MP59; -.
DR EnsemblPlants; OB07G31910.1; OB07G31910.1; OB07G31910.
DR Gramene; OB07G31910.1; OB07G31910.1; OB07G31910.
DR eggNOG; KOG0298; Eukaryota.
DR HOGENOM; CLU_001726_2_0_1; -.
DR OMA; QLFEQMC; -.
DR Proteomes; UP000006038; Chromosome 7.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18070; DEXQc_SHPRH; 1.
DR CDD; cd15517; PHD_TCF19_like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR048686; SHPRH_helical_1st.
DR InterPro; IPR048695; SHPRH_helical_2nd.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR45865:SF1; E3 UBIQUITIN-PROTEIN LIGASE SHPRH; 1.
DR PANTHER; PTHR45865; E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21325; SHPRH_helical-1st; 1.
DR Pfam; PF21324; SHPRH_helical-2nd; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 460..653
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 1359..1408
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1451..1627
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1634..1656
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1675 AA; 188661 MW; DD3AFBE3E74B00E0 CRC64;
MGRRKSRPAR AGGLGAGAAA EPDAPSPSXX XASKSRRAAK GEARRDVCFE VDSSTWCLSD
GDRRDLAELV MRDVRISGEG EEALDVAALY EAGREKRFPL RLRVRDAPEE GFRLGNWPVV
PSDCVILEYV VAGMVISGCF DGPDEGVSGL AHLVKLRFVT LRVHAFNVSQ SGDSVSVVSF
RVRLGVMEKA FAACESLLEV TRHPWRKSLM NMVAWVRPEV MTSTAIYGMD GPVLPINGDA
NGDFTPKKDS QFDLAALYEA IKPSMEAGLF EEELADLLPH LRPYQLRAAN WMVQREKGNT
MVSSPNQQYV HSAPYCVPID FMHKNSRMFF NPFNGNVSMH PEPSPPYVSG GILADEMGLG
KTVELLACIF AHRRPYSAGY SVSSNIKGTY QIKRHKRERV ECICGAASVT SAYQGIWIQC
DICDAWQHAS CVGYSPKEEM HFSDDNGDAA ANNEQGTIKS KIKRKKKDKY CTAETEEKYI
CTLCLELIEA AQSNILSHAT LIVCPSPILA QWHSEITRHT RPGSLKVYIY EGARNLDLPS
TQKIDMAEIS TCDIVLTTYD VLKEDLSHDS DRHDGDRCFL RYQKKYPVTP TVLTRVHWWR
LCLDEAQMVE SSRTSVTEMA MRLNAQHRWC ITGTPIQHRL DDLFGLLRFL RTSPFDTYRW
WADIIRDPYE KGDTIAMNYT HKFFKEIMWR SSKIHVSQEL QLPPQEECFS WLIFSSIEEY
FYQKQHATCM DHAHEIIRRI RNDANKREPI SDSSVVSNVY LSNDDIAKLL VPLLKLRQAC
CHPQVGSSGL CSLQRTPLSM GEILQVLIGK AKVEGEEELR KIVVALNGLA GLAVIEQKNQ
EAISLYKEAL ALACENFDDF RVDPLLNLHI NHNLAELLRD SSEYLQECPL KEQTFEAHGG
RKRKETSPVD SDMCGIKRTK MCENSRSSLM TDSPETSKED ENIDAQVCKN REMDVENDSG
CHSSSVCLAD SCLKKTCNSI REKYLSVFTS KLLIAQKDFS ASFTEVSTLS TELQNQNMNW
WLYALDCIEQ NKDSADELIR KIDISSNKST TGLGSTGMVQ TISGLKYTIQ AGIDSLQSSR
QQLMHRLLEL DKTMDNPKDE DIECHRYCPN CYDGNGSLCI QCELDELFQA YEARLFLVKK
SNNDSVIASV EEAQDLQRRK YELNHFFRNT KTNEGSEPGD ENKNPRFARE NIQVYRHPSR
IETSLKVIRT HSKTIMGEQY AKTAKKHLLL FEAMRKEFPQ ARNLSIAQNQ LLRAHDEIKM
SLSRLQLKEN DDEPSAVNIV TREELIPYNV QFTSDKFLSL SSLARIRGQL RYLKGLVLCN
KKTLRKHGES LPELGNCAAM ATSFAATGQT VSDTSNESCP ICQEKLLDQK MVFQCGHSVC
CKCCLYMTEQ AAAHFGRSKK WIMCPTCRQR TDLENIAFVV ENKRENADRE VEDLAERAIS
VQGSYGTKIE AVTRRILRIT STDGAAKILV FSSWNDVLDV LEHSLAANNL SYVRMKGGRK
SQAALSQFKG LAGSISGERA KKSFSKMQPV QVLLMLIQHG ANGLNLLEAQ HVILVEPLLN
PAAEAQAISR IHRVGQDKNT FIHRFIVKNT IEESIYKLNR GRAVCSTIHR KSKNFKDELV
LTLKDIESLF PMVASDQPSE QEDKNQGGHL RSLPPSIAAG LAAERRSLVQ HDNLH
//