ID J3MT51_ORYBR Unreviewed; 875 AA.
AC J3MT51;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE RecName: Full=Rad4 beta-hairpin domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=102701100 {ECO:0000313|EnsemblPlants:OB08G22810.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB08G22810.1};
RN [1] {ECO:0000313|EnsemblPlants:OB08G22810.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB08G22810.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB08G22810.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the XPC family. {ECO:0000256|ARBA:ARBA00009525}.
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DR RefSeq; XP_006660145.1; XM_006660082.2.
DR AlphaFoldDB; J3MT51; -.
DR STRING; 4533.J3MT51; -.
DR EnsemblPlants; OB08G22810.1; OB08G22810.1; OB08G22810.
DR GeneID; 102701100; -.
DR Gramene; OB08G22810.1; OB08G22810.1; OB08G22810.
DR KEGG; obr:102701100; -.
DR eggNOG; KOG2179; Eukaryota.
DR HOGENOM; CLU_012473_0_0_1; -.
DR OMA; FQAKHLG; -.
DR OrthoDB; 181129at2759; -.
DR Proteomes; UP000006038; Chromosome 8.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:EnsemblPlants.
DR GO; GO:0006289; P:nucleotide-excision repair; IEA:EnsemblPlants.
DR GO; GO:0009650; P:UV protection; IEA:EnsemblPlants.
DR Gene3D; 3.10.620.30; -; 1.
DR Gene3D; 2.20.20.110; Rad4, beta-hairpin domain BHD1; 1.
DR Gene3D; 3.30.70.2460; Rad4, beta-hairpin domain BHD3; 1.
DR Gene3D; 3.90.260.10; Transglutaminase-like; 1.
DR InterPro; IPR018327; BHD_2.
DR InterPro; IPR004583; DNA_repair_Rad4.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR018325; Rad4/PNGase_transGLS-fold.
DR InterPro; IPR018326; Rad4_beta-hairpin_dom1.
DR InterPro; IPR018328; Rad4_beta-hairpin_dom3.
DR InterPro; IPR042488; Rad4_BHD3_sf.
DR InterPro; IPR036985; Transglutaminase-like_sf.
DR PANTHER; PTHR12135:SF0; DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLS; 1.
DR PANTHER; PTHR12135; DNA REPAIR PROTEIN XP-C / RAD4; 1.
DR Pfam; PF10403; BHD_1; 1.
DR Pfam; PF10404; BHD_2; 1.
DR Pfam; PF10405; BHD_3; 1.
DR Pfam; PF03835; Rad4; 1.
DR SMART; SM01030; BHD_1; 1.
DR SMART; SM01031; BHD_2; 1.
DR SMART; SM01032; BHD_3; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
FT DOMAIN 554..605
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01030"
FT DOMAIN 607..669
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01031"
FT DOMAIN 676..750
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01032"
FT REGION 1..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 305..338
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 355..380
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 789..854
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 743..770
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 54..93
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 305..323
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 356..375
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 799..815
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 816..854
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 875 AA; 97579 MW; 9ECDAA69F7EA5338 CRC64;
MRTRRSQRGR DADAAETPPP GARSGGGDAA SGGTRRRRAS SSAVKGKSPA KVEMESALGD
KGKNVKVHTE GDDDAGMTRC SSEKNSLDKE DPEAIRGCDA ADMDWEEGHI LAEEHKESYE
LGETFTVEFT DVPSSTEKKT VRRLTAEEKE LAELVHRVHL LCLLARGRVI DKACNDPLIQ
ASILSVLPQH VLWNSVETPI LKANELRSLV SWFHRTFCVT PHSDDRGSFE SNLAFALQNH
VGTAEEVCAL SVALFRALNL TARFVTNMDV AGLKPDTKSM ETSNQDAPRL CTKALPSSSF
VAGHNEHNNL SPVVSQSQDN TEDSIDTTPK KHKVQGCKKS LSKKLSKCKA DHGISCASQS
KDSSSSSQYP STSNAEVPKR KGDWEFELQL EMALLASAAE VQDNELATHL NLSTDSILNS
TPPFKKLNKS AEAPCNSSTV WSRSGAPLFW AEVFCGGQAS SGKWVHVDVV NDIIDGEQKI
EAASAVCRKP LRYVVAFAGN GAKDVTRRYC LQWHRIVQGR VNPEWWKNVL APLERLELAA
TNDTEDMELQ TRALTEPLPT SQQAYKDHHL YALEKWLHKN QVLHPKGPVL GFCKGHPVYP
RSCVQTLQSR HGWLREGLQV RENELPAKIV TRPKRTFNSQ SLQSNSNEDE LKPTLELYGK
WQLEPLQLPH AVNGIVPKND RGQVDVWSEK CLPPGTVHLR LPRLFQVAKR LGIDYAPAMV
GFDYRSGRCH PVFDGIVVCS EFKNIILEAY AEEEEQRQAE ERKQQEAQAL IRWYQLLCSV
VTRQRLKDSY KAPSSDHGPS GPSKDSSQQK STNDTRSSET KTRASRLQED RLLDSPFLAH
EHEHEFPEED QSFDEETFVR TKRCPCGFSI QVEEL
//