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Database: UniProt
Entry: J3MTA4_ORYBR
LinkDB: J3MTA4_ORYBR
Original site: J3MTA4_ORYBR 
ID   J3MTA4_ORYBR            Unreviewed;       595 AA.
AC   J3MTA4;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   08-NOV-2023, entry version 46.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   Name=102715962 {ECO:0000313|EnsemblPlants:OB08G23340.1};
OS   Oryza brachyantha (malo sina).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB08G23340.1};
RN   [1] {ECO:0000313|EnsemblPlants:OB08G23340.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB08G23340.1};
RX   PubMed=23481403;
RA   Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA   Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA   Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA   An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA   Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA   Chen M.;
RT   "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT   Oryza genome evolution.";
RL   Nat. Commun. 4:1595-1595(2013).
RN   [2] {ECO:0000313|EnsemblPlants:OB08G23340.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (APR-2013) to UniProtKB.
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DR   RefSeq; XP_006659434.1; XM_006659371.2.
DR   RefSeq; XP_015695869.1; XM_015840383.1.
DR   AlphaFoldDB; J3MTA4; -.
DR   EnsemblPlants; OB08G23340.1; OB08G23340.1; OB08G23340.
DR   GeneID; 102715962; -.
DR   Gramene; OB08G23340.1; OB08G23340.1; OB08G23340.
DR   KEGG; obr:102715962; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_6_1; -.
DR   OMA; YSSAGNW; -.
DR   OrthoDB; 456150at2759; -.
DR   Proteomes; UP000006038; Chromosome 8.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 3.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF13041; PPR_2; 2.
DR   PROSITE; PS51375; PPR; 2.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          184..214
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          287..321
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          503..595
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   595 AA;  65660 MW;  3A27F7BCD7DEB3E0 CRC64;
     MASHLARALR PSTPSSTTSA AAALLSSTSP LPAARFLQLH AHVLRTGGLL LLRAPPASAS
     AFLSLAAASL PSPRALSVLL HHITQESLPS TFCCNTILGS LREPDAVRFL RRVRALGRRG
     NAFSLSIVLK HCRTIGHASQ LHANVVVEGH VRDALLATSL MRAYAACGDG DAARKMFDEM
     PVKDTVAWNV LITCYTKNRR TKDALKIFDE MRSGENGTEP DDVTCILLLQ ACTSLGALDF
     GEQVWDYAQD HGYGGELKVR NSLITMYTKC GCMEKAYQVF SGTPNKSVVT WSAMISGLAA
     NGFGKDAISA FEEMGRSGIA PDEQTFTGVL SACSHSGLVD EGFKFFDIMC HEYQLMPNVH
     HYGCMVDLMG RAGLLNQAYE LVVREMRVAP DATIWRTLLG ACRVHGHVDL GERVINHLIE
     LKAQQAGDYV LLLNTYAAAE DWKNVAVVRK LMKEKGIQTT PGCTTVEMNG EIHEFIADDD
     SHPRKAEIYE KLNEINKHLR IAGYVPNMLS ELHDLDSEGK ECALAYHSEK LAIAFALLVT
     PQHRPIRLAK NLRVCVDCHN FTKVFSGVYN RLVIVRDRTR FHHFKGFQCS CNDYW
//
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