ID J3N3C0_ORYBR Unreviewed; 937 AA.
AC J3N3C0;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB10G20180.1};
RN [1] {ECO:0000313|EnsemblPlants:OB10G20180.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB10G20180.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB10G20180.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
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DR AlphaFoldDB; J3N3C0; -.
DR STRING; 4533.J3N3C0; -.
DR EnsemblPlants; OB10G20180.1; OB10G20180.1; OB10G20180.
DR Gramene; OB10G20180.1; OB10G20180.1; OB10G20180.
DR eggNOG; KOG0920; Eukaryota.
DR HOGENOM; CLU_001832_1_4_1; -.
DR OMA; WLQSDKH; -.
DR Proteomes; UP000006038; Chromosome 10.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934:SF237; ATP-DEPENDENT DNA_RNA HELICASE DHX36; 1.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 179..346
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 431..602
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 103..135
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 937 AA; 105286 MW; E47545B09B8BAC6C CRC64;
MAGEVEKVDE NEWWNKIIQL REGSQQELVV KRNFGRDGQN ILANMAQRQG LYFNAYNKGK
TVVFSKVPLP DYRADLDERH GSTQQEIKMS SETERRVENL LANAKSNSND SASTSTLTLR
QSRPSASSSV TESTTYINKE KLSSELRDMQ NSRKLMPSAR SMQSFREKLP AFNMREEFLK
AVAANQILVI SGETGCGKTT QLPQFILEEE IENLRGSDCS IICTQPRRIS AISVAARVAS
ERGEELGDTV GYQIRLESKR SAQTRLLFST TGVLLRRLVQ EPDLVGVSHL LVDEIHERGM
NEDFLIIILR DLLPRRPDLR LILMSATINA ELFSKYFGEA PIMHIPGFTF PVTELFLEEV
LEKTRYRIKS EQDNFQGNSR RKRLASVKSD PISDAFENVD INKEYGNYSA ATRQSLEAWS
ATELNLSLVE GTIEYICRHE GEGAILVFLT GWDEISKLLD KIKGNNLLGN SNRFLVLPLH
GSMPTVNQRE IFDRPPANMR KIVLATNIAE SSITIDDVVY VIDCGKAKET SYDALNKLAC
LLPSWISKAS ARQRRGRAGR VQPGVCYRLY PKVIYDAMPQ FQLPEILRTP LQELCLTIKS
LQLGATASFL AKALQPPDPL SVKNAIELLK TIGALDDMEE LTSLGRHLCT LPLDPNIGKM
LLIGSVFQCL DPALTIAAAL AYRNPFVLPI DRKEEADAVK RSFAGDSCSD HIALVKAFEA
WKDSRRSGRE RSFCWENFLS PMTLQMMDDM RNQFFDLLSD IGFVSKTRGL KAYNYYGKDL
EMVCAVLCAG LYPNVVQCKR RGKRTAFYTK DVGKVDIHPS SVNARIDQFP LPYLVYSEKV
KTASIYVRDS TNVSDYALLL FGGSLSESKT GEGIEMLGGY LHFSAPRRII ELIQRLRGEL
DKLLQRKIEE PALDIFSEGK GVVAAAVELL HSQNVYH
//
