ID J3NDP3_ORYBR Unreviewed; 180 AA.
AC J3NDP3;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 24-JAN-2024, entry version 42.
DE RecName: Full=UBP-type domain-containing protein {ECO:0000259|PROSITE:PS50271};
GN Name=102705486 {ECO:0000313|EnsemblPlants:OB12G21010.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G21010.1};
RN [1] {ECO:0000313|EnsemblPlants:OB12G21010.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G21010.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB12G21010.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
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DR RefSeq; XP_006664055.1; XM_006663992.2.
DR AlphaFoldDB; J3NDP3; -.
DR STRING; 4533.J3NDP3; -.
DR EnsemblPlants; OB12G21010.1; OB12G21010.1; OB12G21010.
DR GeneID; 102705486; -.
DR Gramene; OB12G21010.1; OB12G21010.1; OB12G21010.
DR KEGG; obr:102705486; -.
DR eggNOG; KOG1343; Eukaryota.
DR HOGENOM; CLU_121179_1_0_1; -.
DR OMA; NRCQHPS; -.
DR OrthoDB; 997998at2759; -.
DR Proteomes; UP000006038; Chromosome 12.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR001607; Znf_UBP.
DR PANTHER; PTHR47665; HISTONE DEACETYLASE-LIKE PROTEIN; 1.
DR PANTHER; PTHR47665:SF1; HISTONE DEACETYLASE-LIKE PROTEIN; 1.
DR Pfam; PF02148; zf-UBP; 1.
DR SMART; SM00290; ZnF_UBP; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50271; ZF_UBP; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00502};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00502};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00502}.
FT DOMAIN 54..156
FT /note="UBP-type"
FT /evidence="ECO:0000259|PROSITE:PS50271"
FT REGION 1..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 25..39
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 180 AA; 19395 MW; 45C7B415DCDF781D CRC64;
MSSSSHAAAG DGSGEPPSTS GPGKEREGGG DEAGREEEGF DLAGASAGWV EARTSCPHLP
TMPADDLARV PPPDSPCSRC HHPAENWLCL ICKDVLCSRF INKHMLYHYQ DTGHCLALSF
SDLSVWCFAC DSYLDVQSIL ELRPVYEVVH LLKFGQRPPF RSLDVLDLSS GQNGSTSSLS
//
