ID J3NE99_ORYBR Unreviewed; 306 AA.
AC J3NE99;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=diaminopimelate epimerase {ECO:0000256|ARBA:ARBA00013080};
DE EC=5.1.1.7 {ECO:0000256|ARBA:ARBA00013080};
GN Name=102710263 {ECO:0000313|EnsemblPlants:OB12G23070.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G23070.1};
RN [1] {ECO:0000313|EnsemblPlants:OB12G23070.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G23070.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB12G23070.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-
CC diaminoheptanedioate; Xref=Rhea:RHEA:15393, ChEBI:CHEBI:57609,
CC ChEBI:CHEBI:57791; EC=5.1.1.7;
CC Evidence={ECO:0000256|ARBA:ARBA00000599};
CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP
CC pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.
CC {ECO:0000256|ARBA:ARBA00005196}.
CC -!- SIMILARITY: Belongs to the diaminopimelate epimerase family.
CC {ECO:0000256|ARBA:ARBA00010219}.
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DR RefSeq; XP_015698441.1; XM_015842955.1.
DR AlphaFoldDB; J3NE99; -.
DR STRING; 4533.J3NE99; -.
DR EnsemblPlants; OB12G23070.1; OB12G23070.1; OB12G23070.
DR GeneID; 102710263; -.
DR Gramene; OB12G23070.1; OB12G23070.1; OB12G23070.
DR KEGG; obr:102710263; -.
DR eggNOG; ENOG502QQKJ; Eukaryota.
DR HOGENOM; CLU_053306_2_1_1; -.
DR OMA; GIRCFAR; -.
DR OrthoDB; 472077at2759; -.
DR UniPathway; UPA00034; UER00025.
DR Proteomes; UP000006038; Chromosome 12.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0008837; F:diaminopimelate epimerase activity; IEA:UniProtKB-EC.
DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-UniPathway.
DR HAMAP; MF_00197; DAP_epimerase; 1.
DR InterPro; IPR018510; DAP_epimerase_AS.
DR InterPro; IPR001653; DAP_epimerase_DapF.
DR NCBIfam; TIGR00652; DapF; 1.
DR PANTHER; PTHR31689:SF0; DIAMINOPIMELATE EPIMERASE; 1.
DR PANTHER; PTHR31689; DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC; 1.
DR Pfam; PF01678; DAP_epimerase; 2.
DR SUPFAM; SSF54506; Diaminopimelate epimerase-like; 2.
DR PROSITE; PS01326; DAP_EPIMERASE; 1.
PE 3: Inferred from homology;
KW Amino-acid biosynthesis {ECO:0000256|ARBA:ARBA00022605};
KW Isomerase {ECO:0000256|ARBA:ARBA00023235};
KW Lysine biosynthesis {ECO:0000256|ARBA:ARBA00023154};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
SQ SEQUENCE 306 AA; 33251 MW; 8AED2C5A7D3FB001 CRC64;
MAVSTPRSAA AFLERRESEH ALHFVKYQGL GNDFIMVDNR DSAVPKVTPE EAAKLCDRNF
GVGADGVIFV MPGVNGADYT MRIFNSDGSE PEMCGNGVRC FARFIAELEN LQGTHSFKIH
TGAGLIIPEI QNDGKVKVDM GQPILSGPNV PTKLPSTKNK AVVQADLVVD GSIWQVTCVS
MGNPHCVTFG TKDLKDLHVD DLKLSDIGPN FEHHEMFPAR TNTEFVQVLS RSHLKMRVWE
RGAGETLACG TGACAVVVAA VLEGRAERKC VVDLPGGPLE IEWREDDNHV YMTGPAEAVF
YGSAIH
//
