ID   J7MFH4_ARATH            Unreviewed;      1475 AA.
AC   J7MFH4;
DT   31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   31-OCT-2012, sequence version 1.
DT   27-MAR-2024, entry version 25.
DE   SubName: Full=Polyprotein {ECO:0000313|EMBL:BAM42649.1};
GN   Name=AtRE2 {ECO:0000313|EMBL:BAM42649.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702 {ECO:0000313|EMBL:BAM42649.1};
RN   [1] {ECO:0000313|EMBL:BAM42649.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Yamada M., Akaoka M., Kato A.;
RT   "Genomic localization of AtRE2, a copia-type retrotransposon, in natural
RT   variants of Arabidopsis thaliana.";
RL   Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; AB701746; BAM42649.1; -; Genomic_DNA.
DR   ExpressionAtlas; J7MFH4; baseline and differential.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR025724; GAG-pre-integrase_dom.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR013103; RVT_2.
DR   PANTHER; PTHR42648:SF24; RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN; 1.
DR   PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR   Pfam; PF13976; gag_pre-integrs; 1.
DR   Pfam; PF14223; Retrotran_gag_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF07727; RVT_2; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
FT   DOMAIN          517..680
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          226..271
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          295..314
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          757..915
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        226..268
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        757..779
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        780..804
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        805..858
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        859..873
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        874..901
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1475 AA;  164782 MW;  8711745C6B44970F CRC64;
     MATHAEEIVL VNTNILNVNM SNVTKLTSTN YLMWSRQVHA LFDGYELAGF LDGSTPMPPA
     TIGTDAVPRV NPDYTRWRRQ DKLIYSAILG AISMSVQPAV SRATTAAQIW ETLRKIYANP
     SYGHVTQLRT QLKQWTKGAK TIDDYMQGFI TRFDQLALLG KPMDHDEQVE RVLENLPDDY
     KPVIDQIAAK DTPPSLTEIH ERLINQESKL LALNSAEVVP ITANVVTHRN TNTNRNQNNR
     GDNRNYNNNN NRSNSWQPSS SGSRSDNRQP KPYLGRCQIC SVQGHSAKRC PQLHQFQSTT
     NQQQSTSPFT PWQPRANLAV NSPYNANNWL LDSGATHHIT SDFNNLSFHQ PYTGGDDVMI
     ADGSTIPITH TGSASLPTSS RSLDLNKVLY VPNINKNLIS VYRLCNTNRV SVEFFPASFQ
     VKDLNTGVPL LQGKTKDELY EWPIASSQAV SMFASPCSKA THSSWHSRLG HPSLAILNSV
     ISNHSLPVLN PSHKLLSCSD CFINKSHKVP FSNSTITSSK PLEYIYSDVW SSPILSIDNY
     RYYVIFVDHF TRYTWLYPLK QKSQVKDTFI IFKSLVENRF QTRIGTLYSD NGGEFVVLRD
     YLSQHGISHF TSPPHTPEHN GLSERKHRHI VEMGLTLLSH ASVPKTYWPY AFSVAVYLIN
     RLPTPLLQLQ SPFQKLFGQP PNYEKLKVFG CACYPWLRPY NRHKLEDKSK QCAFMGYSLT
     QSAYLCLHIP TGRLYTSRHV QFDERCFPFS TTNFGVSTSQ EQRSDSAPNW PSHTTLPTTP
     LVLPAPPCLG PHLDTSPRPP SLPSPLCTTQ VSSSNLPSSS ISSPSSSEPT APSHNGPQPT
     AQPHQTQNSN SNSPILNNPN PNSPSPNSPN QNSPLPQSPI SSPHIPTPST SISEPNSPSS
     SSTSTPPLPP VLPAPPIIQV NAQAPVNTHS MATRAKDGIR KPNQKYSYAT SLAANSEPRT
     AIQAMKDDRW RQAMGSEINA QIGNHTWDLV PPPPPSVTIV GCRWIFTKKF NSDGSLNRYK
     ARLVAKGYNQ RPGLDYAETF SPVIKSTSIR IVLGVAVDRS WPIRQLDVNN AFLQGTLTDE
     VYMSQPPGFV DKDRPDYVCR LRKAIYGLKQ APRAWYVELR TYLLTVGFVN SISDTSLFVL
     QRGRSIIYML VYVDDILITG NDTVLLKHTL DALSQRFSVK EHEDLHYFLG IEAKRVPQGL
     HLSQRRYTLD LLARTNMLTA KPVATPMATS PKLTLHSGTK LPDPTEYRGI VGSLQYLAFT
     RPDLSYAVNR LSQYMHMPTD DNWNALKRVL RYLAGTPDHG IFLKKGNTLS LHAYSDADWA
     GDTDDYVSTN GYIVYLGHHP ISWSSKKQKG VVRSSTEAEY RSVANTSSEL QWICSLLTEL
     GIQLSHPPVI YCDNVGATYL CANPVFHSRM KHIALDYHFI RNQVQSGALR VVHVSTHDQL
     ADTLTKPLSR VAFQNFSRKI GVIKVPPSCG GVLRI
//