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Database: UniProt
Entry: J8E5I0_BACCE
LinkDB: J8E5I0_BACCE
Original site: J8E5I0_BACCE 
ID   J8E5I0_BACCE            Unreviewed;       690 AA.
AC   J8E5I0;
DT   31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   31-OCT-2012, sequence version 1.
DT   24-JAN-2024, entry version 54.
DE   SubName: Full=PAS domain S-box protein {ECO:0000313|EMBL:EJQ83844.1};
GN   ORFNames=IGC_01370 {ECO:0000313|EMBL:EJQ83844.1};
OS   Bacillus cereus HuA4-10.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus;
OC   Bacillus cereus group.
OX   NCBI_TaxID=1053206 {ECO:0000313|EMBL:EJQ83844.1, ECO:0000313|Proteomes:UP000006977};
RN   [1] {ECO:0000313|EMBL:EJQ83844.1, ECO:0000313|Proteomes:UP000006977}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HuA4-10 {ECO:0000313|EMBL:EJQ83844.1,
RC   ECO:0000313|Proteomes:UP000006977};
RG   The Broad Institute Genome Sequencing Platform;
RG   The Broad Institute Genome Sequencing Center for Infectious Disease;
RA   Feldgarden M., Van der Auwera G.A., Mahillon J., Duprez V., Timmery S.,
RA   Mattelet C., Dierick K., Sun M., Yu Z., Zhu L., Hu X., Shank E.B.,
RA   Swiecicka I., Hansen B.M., Andrup L., Young S.K., Zeng Q., Gargeya S.,
RA   Fitzgerald M., Haas B., Abouelleil A., Alvarado L., Arachchi H.M.,
RA   Berlin A., Chapman S.B., Goldberg J., Griggs A., Gujja S., Hansen M.,
RA   Howarth C., Imamovic A., Larimer J., McCowen C., Montmayeur A., Murphy C.,
RA   Neiman D., Pearson M., Priest M., Roberts A., Saif S., Shea T., Sisk P.,
RA   Sykes S., Wortman J., Nusbaum C., Birren B.;
RT   "The Genome Sequence of Bacillus cereus HuA4-10.";
RL   Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJQ83844.1}.
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DR   EMBL; AHEA01000015; EJQ83844.1; -; Genomic_DNA.
DR   RefSeq; WP_002145826.1; NZ_JH792148.1.
DR   AlphaFoldDB; J8E5I0; -.
DR   PATRIC; fig|1053206.3.peg.1392; -.
DR   HOGENOM; CLU_000445_8_1_9; -.
DR   Proteomes; UP000006977; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd00130; PAS; 2.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.40.50.720; NAD(P)-binding Rossmann-like Domain; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 2.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   NCBIfam; TIGR00229; sensory_box; 2.
DR   PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 2.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF51735; NAD(P)-binding Rossmann-fold domains; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR   PROSITE; PS50112; PAS; 2.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          116..167
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          235..291
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          369..599
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
SQ   SEQUENCE   690 AA;  76829 MW;  1BE8F96218ED69BF CRC64;
     MKQKVLIVGA GEGGSILLSL LQNSNIFQII GVIDINPIAK GLQIAKEYGI PIGDSVTPFL
     SMHIDVMFDM TGDYDSHKIL LGSKHKDTLL IPGDIAKIVT RLAHEKEGLI GKLEEQTQQG
     NLILNSTHDG MVVIDQEGQV RLFNKSAERI IGYKKEEAIG KYILEVIPTS KLLRIIRTKK
     IEVNHELTLE NEKKIITTRI PILKEGGEVQ GAFAIFKDIT EVVDLAEEVT DLKEIQTLLE
     AIINSSEEAI SVVDEKGRGL VINPAYTKLT GLTEEDILGK PATTDIVEGE SMHMKVLRTR
     RAVRGIHMKI GQKKRDVIVN VAPVIVDGIL KGSVGVIRDV SEIQKLTNEL NRARQIIRTL
     EAKYSFDDIV GDSDETTAAI EQAKLGANTP ATVLLRGESG TGKELFAHAI HNSSNRKYNK
     FVRVNCAAIS ETLLESELFG YEEGAFSGAK RGGKRGFFEE ANNGSVFLDE IGELSANTQA
     KLLRVLQEKE IVKVGGTKAI PINVRVIAAT HVNLEKAILE GKFREDLYYR LNKIPIQIPS
     LRQRKGDIPA IAERLIQKIN QDYGRNVEGL TDSAVSYLQS YEWPGNVREL ENILGRAIIF
     MNYNEIYIDV QHLPPLHKEE QGELNQNNLL PELEEKPLEH LVTEFEGNII RGYLEKFDGN
     KTKTAKALGI SVRNLYYKLE KYDCAKNSMQ
//
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