ID J9DGU2_9PROT Unreviewed; 481 AA.
AC J9DGU2;
DT 31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=HTH cro/C1-type domain-containing protein {ECO:0000259|PROSITE:PS50943};
GN ORFNames=IMCC14465_11390 {ECO:0000313|EMBL:EJW21343.1};
OS alpha proteobacterium IMCC14465.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; PS1 clade.
OX NCBI_TaxID=1220535 {ECO:0000313|EMBL:EJW21343.1, ECO:0000313|Proteomes:UP000004836};
RN [1] {ECO:0000313|EMBL:EJW21343.1, ECO:0000313|Proteomes:UP000004836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IMCC14465 {ECO:0000313|EMBL:EJW21343.1,
RC ECO:0000313|Proteomes:UP000004836};
RX PubMed=23209213; DOI=10.1128/JB.01888-12;
RA Yang S.J., Kang I., Cho J.C.;
RT "Genome Sequence of Strain IMCC14465, Isolated from the East Sea, Belonging
RT to the PS1 Clade of Alphaproteobacteria.";
RL J. Bacteriol. 194:6952-6953(2012).
CC -!- SIMILARITY: Belongs to the short-chain fatty acyl-CoA assimilation
CC regulator (ScfR) family. {ECO:0000256|ARBA:ARBA00007227}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJW21343.1}.
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DR EMBL; ALYF01000003; EJW21343.1; -; Genomic_DNA.
DR AlphaFoldDB; J9DGU2; -.
DR STRING; 1220535.IMCC14465_11390; -.
DR PATRIC; fig|1220535.3.peg.1133; -.
DR eggNOG; COG1396; Bacteria.
DR eggNOG; COG3800; Bacteria.
DR OrthoDB; 1123084at2; -.
DR Proteomes; UP000004836; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR026281; HTH_RamB.
DR InterPro; IPR010359; IrrE_HExxH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR018653; ScfR_C.
DR PANTHER; PTHR46797; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR46797:SF23; HTH-TYPE TRANSCRIPTIONAL REGULATOR PRPR; 1.
DR Pfam; PF01381; HTH_3; 1.
DR Pfam; PF06114; Peptidase_M78; 1.
DR Pfam; PF09856; ScfRs; 1.
DR PIRSF; PIRSF019251; Rv0465c; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000004836};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 19..73
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 481 AA; 54578 MW; 086144A01D6D9CA2 CRC64;
MKKAEGANLD RKLFAGMRIR RLRRELALTQ AVMAESLGIS TSYLNLIERD QRPVSAQILI
KMVDVFDIDP RGLAGDEEAR AYTQLREIFA DPLFQDTPVA DQEIRDISAA SPNAVDAIAR
LFQTYRDAST TSSMLAERLA DNTHGETTSA LMSFEEVRDF INQRSNHFPE LDDYAEELYI
KAGLVDDDPF LALRQYLQHA HGVSTRIGPV DLMGDDLRRY DRHRQTLFLS ELLNQSSRAF
QIAYQLAYFE HSKAVEEIIS NSNLENSEAQ RLARLALINY AAAAILMPYG IFLQTAEDNG
YDITLLSRRF GTSFEQVCHR LTTLQRPGAK GVPFFLIRID NAGNVSKRFA AGGFHFSRFG
GTCPRWNIHD SFRQPGKVMT QIICMEDNTR YFSISRTVSR NRSAFDKQDN QFAIGLGCEI
SHAGKLVYSH QYNLEETKSD MPIGVNCRLC ERLDCHQRAT PPLMRSLRVD DNIRGLSPFD
F
//
