ID J9Z7E5_TORCL Unreviewed; 548 AA.
AC J9Z7E5;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE SubName: Full=Phytochrome P {ECO:0000313|EMBL:AFS51090.1};
DE Flags: Fragment;
GN Name=PHYP {ECO:0000313|EMBL:AFS51090.1};
OS Torreya californica (California nutmeg).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Pinopsida; Pinidae; Conifers II; Cupressales; Taxaceae;
OC Torreya.
OX NCBI_TaxID=89482 {ECO:0000313|EMBL:AFS51090.1};
RN [1] {ECO:0000313|EMBL:AFS51090.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=22988083; DOI=10.1073/pnas.1213621109;
RA Leslie A.B., Beaulieu J.M., Rai H.S., Crane P.R., Donoghue M.J.,
RA Mathews S.;
RT "Hemisphere-scale differences in conifer evolutionary dynamics.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:16217-16221(2012).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; JX559907; AFS51090.1; -; Genomic_DNA.
DR AlphaFoldDB; J9Z7E5; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 37..213
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 438..509
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:AFS51090.1"
FT NON_TER 548
FT /evidence="ECO:0000313|EMBL:AFS51090.1"
SQ SEQUENCE 548 AA; 59777 MW; 58FD6CE8A246FDAE CRC64;
AAALVSWAGG GGGGGTVPSQ RLAVRATSRL QSVPSGDIGL LCDTVVEEVR ELTGYDRVMV
YKFHEDEHGE VVAEIRRSDL EPYLGLHYPA TDIPQASRFL FMQNRVRMIC DCRATPVKVK
QAEELKQPLC LVGSTLRAPH GCHAQYMANM GSIASLVMAV IVNGNGIDED GVSGSGSGSG
RSSIKLWGLV VCHHTSPRAV PFPLRSACEF LMQTFGLQIN MELQLAAQLI ENSILRTQTL
LCDMLLRDAP IGIVTQSPSI MDLVKCDGAA LYYGGMFWLL GVTPIEAQLK DIADWLLECH
GDSTGLSTDS LADAGYPGAA SLGDAVCGMA AARITSKDFL FWFRSHTAKE MKWGGAKHHP
DDKDDGRRMH PRSSFKAFLE VVKRRSFPWE NVEMDAIHSL QLILRGSFQD IDDSGTKTMV
HARLNDLKLQ GIDELSSVAS EMVRLIETAT APILAVDSSG IVNGWNAKVG ELTGLPVGEA
MGKSLVHDLV FEESIETVEK MLYHALRGEE EKNVEIKLRT FGPQKQKKVI YLVVNACSSR
DYTDKIVG
//
