ID J9Z811_PINST Unreviewed; 656 AA.
AC J9Z811;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE SubName: Full=Phytochrome P {ECO:0000313|EMBL:AFS51265.1};
DE Flags: Fragment;
GN Name=PHYP1 {ECO:0000313|EMBL:AFS51265.1};
OS Pinus strobus (Eastern white pine).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Pinopsida; Pinidae; Conifers I; Pinales; Pinaceae; Pinus;
OC Pinus subgen. Strobus.
OX NCBI_TaxID=3348 {ECO:0000313|EMBL:AFS51265.1};
RN [1] {ECO:0000313|EMBL:AFS51265.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=22988083; DOI=10.1073/pnas.1213621109;
RA Leslie A.B., Beaulieu J.M., Rai H.S., Crane P.R., Donoghue M.J.,
RA Mathews S.;
RT "Hemisphere-scale differences in conifer evolutionary dynamics.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:16217-16221(2012).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; JX560082; AFS51265.1; -; Genomic_DNA.
DR AlphaFoldDB; J9Z811; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 152..321
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 546..617
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:AFS51265.1"
FT NON_TER 656
FT /evidence="ECO:0000313|EMBL:AFS51265.1"
SQ SEQUENCE 656 AA; 72473 MW; B36F28B73F1740BE CRC64;
AYLSRIQRGG IIQPFGCVLA VEETTFRIIA YSENAVEMLD LAPQSVPSME QSQQEVLTIG
TDVRTQFTAA SSHSLEKAAV TQEISLMNPI WVHCKNSRKP FYAIVHRIDV GMVIDLEPLR
TGDAFMSAAG AVQSQKLAVR AISRLQSLPC GDIGLLCDTV VENVRELTGY DRVMVYKFHE
DEHGEVVFEI RRSDLEPYLG LHYPATDIPQ ASRFLFMQNR VRMICDCMAT PVKVIQSEEL
MQPLCLVGST LRAPHGCHAQ YMANMGSIAS LVMAVIINGN DDEGGGSGRN SMKLWGLVVC
HHTSPRPVPF PLRYACEFLM QAFGLQLNME LQLAAQLTEK HILRTQTLLC DMLLRHAPMG
IVTQSPSIMD LVKCDGAALY YGGKCWMLGV TPTEAQIKDI ADWLLEHHGD STGLSTDSLA
DAGYPGAASL GDAVCGMASA RITSKDFIFW FRSHTAKEMK WGGAKHHPDD KDDGRRMHPR
SSFKAFLEVV KRRSLPWDNV EIDAIHSLQL ILRGSFQDID DSGTKTMVHS QLNDLRLQGI
DELSSVASEM VRLIETATAP ILAVDYNGCV NGWNAKVAEL TGLPVGEAMG MSLVQDLVFE
ESVESVEKML YNALRGEEEK NVEMMLKTFG PQKEKKAVIL VVNACSSRDF TDNIVG
//
