GenomeNet

Database: UniProt
Entry: K0SYJ3_THAOC
LinkDB: K0SYJ3_THAOC
Original site: K0SYJ3_THAOC 
ID   K0SYJ3_THAOC            Unreviewed;      1566 AA.
AC   K0SYJ3;
DT   28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT   28-NOV-2012, sequence version 1.
DT   24-JAN-2024, entry version 57.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EJK66066.1};
GN   ORFNames=THAOC_13031 {ECO:0000313|EMBL:EJK66066.1};
OS   Thalassiosira oceanica (Marine diatom).
OC   Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC   Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC   Thalassiosiraceae; Thalassiosira.
OX   NCBI_TaxID=159749 {ECO:0000313|EMBL:EJK66066.1, ECO:0000313|Proteomes:UP000266841};
RN   [1] {ECO:0000313|EMBL:EJK66066.1, ECO:0000313|Proteomes:UP000266841}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCMP1005 {ECO:0000313|EMBL:EJK66066.1,
RC   ECO:0000313|Proteomes:UP000266841};
RX   PubMed=22835381; DOI=10.1186/gb-2012-13-7-r66;
RA   Lommer M., Specht M., Roy A.S., Kraemer L., Andreson R., Gutowska M.A.,
RA   Wolf J., Bergner S.V., Schilhabel M.B., Klostermeier U.C., Beiko R.G.,
RA   Rosenstiel P., Hippler M., Laroche J.;
RT   "Genome and low-iron response of an oceanic diatom adapted to chronic iron
RT   limitation.";
RL   Genome Biol. 13:R66-R66(2012).
CC   -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. ISWI subfamily.
CC       {ECO:0000256|ARBA:ARBA00009687}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJK66066.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AGNL01015292; EJK66066.1; -; Genomic_DNA.
DR   EnsemblProtists; EJK66066; EJK66066; THAOC_13031.
DR   eggNOG; KOG0385; Eukaryota.
DR   OMA; TEARINM; -.
DR   Proteomes; UP000266841; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR   GO; GO:0031491; F:nucleosome binding; IEA:InterPro.
DR   CDD; cd17997; DEXHc_SMARCA1_SMARCA5; 1.
DR   CDD; cd00167; SANT; 1.
DR   CDD; cd18793; SF2_C_SNF; 1.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR044754; Isw1/2_DEXHc.
DR   InterPro; IPR036306; ISWI_HAND-dom_sf.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001005; SANT/Myb.
DR   InterPro; IPR015195; SLIDE.
DR   InterPro; IPR038718; SNF2-like_sf.
DR   InterPro; IPR000330; SNF2_N.
DR   PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR   PANTHER; PTHR45623:SF49; ISW-1; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF09011; HMG_box_2; 1.
DR   Pfam; PF09111; SLIDE; 1.
DR   Pfam; PF00176; SNF2-rel_dom; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF101224; HAND domain of the nucleosome remodeling ATPase ISWI; 1.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS50118; HMG_BOX_2; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Reference proteome {ECO:0000313|Proteomes:UP000266841}.
FT   DOMAIN          3..101
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DOMAIN          306..501
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   DOMAIN          634..788
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
FT   DNA_BIND        3..101
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          109..202
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          223..281
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          396..419
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1302..1414
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1530..1566
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        134..202
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1304..1324
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1334..1349
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1379..1411
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1541..1566
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1566 AA;  178553 MW;  BAEDE981BA5388AD CRC64;
     MVVTKAKTAF GFWQVSNRSS SMFDQFGPTR SRIQISTLNL LQPQADKLAG IMRRDDVDGM
     GKAMKILSAE WQTLSDLDRK PYLDREEEDR ARYQRECRDA DEAAYLAHQE RKKKNQMPAE
     DENLVSSSRG ARAQQDAERA KRDAKAQARR EAADARLTEE EREERRAAKA AKRAEVLERQ
     RKKDAEEKAV ADRHKKLDKE ATKKTADRLK YLLAQSDIFS RLKDGKSRTT EDASRADAGG
     GYKSKHSPAK KKGRPKKDEE AAPDGEGLDE DDEEEGESHT FLTKQPSCIK FGTLKPYQLE
     GLNWMIHLAE KGLNGILADE MGLGKTLQSI SILAYHYEYL KIQGPHLICV PKSTLSNWMN
     ELNRWCPSLR VIRFHGMKDE REELVEDYFT NEAAAHDGRR PTRQIRNEET GEMEDDNSDN
     PRAWDVCVTT YEMANMEKRT LGRFAWKYLI IDEAHRLKNE ASMFSTTVRE FNTANRLLLT
     GTPLQNNLHE LWALLNFLLP DIFSSSQQFD EWFNLEIDDA DAKKKMISQL HGVLRPFMIR
     RLKADVAKGL PPKTETLVMV GMSKMQKQLY KRLLLRDIKA ITGKNTNSGK TAVLNIVMQL
     RKCCNHPYLF EGIEDRTLDP LGEHLVDNCG KLNMVDKLLK KLKERGSRVL IFTQMTRILD
     IMEDFMHMRG YKYCRLDGQT DYETRERSIR EFNAEGSEKF CFILSTRAGN PQADLQAQDR
     CHRLGQKKPV SIFRLVTENT VEQKIIERAQ QKLKLDAMVV QQGRLKEKDK VTKEEVMAAV
     RFGADAVFRS EESTISNDDI DVILERGKAK TKELADKITK AEKGDLLDFR LDGGVSSQTF
     EGIDYSDAQL RNQLRLLAAD SMGKRERKPP PVTYTEIIQP KKSMVIKNQK IRLPRPLRLP
     SMEDHQFYNR ARLLEISDKE FQLFATLKET GKVPSYEYME QKRTILPPNL AKEKWELLAE
     GFSEINRSQF FHFIKACTKY GRADFDNISE AMGLPTDLIR VYSTAFWEYG PTELKSDEWE
     RVKGQIEKGE RRLEKQREQE KMLGKFVATF DNPETDITFA NKGNAHFSLE QDRAILCAVA
     KHGYGNWEKV REEIRNDSNL LFHHTVQGMN IDAISKRCDY RLRQMEKELE TREKKINVKP
     PAVVEAESTL EAIRQMEEYE IEKQDMEMRG QMVPPIQAYV SNGLEVFEDY LRDQQECIDG
     LREIETQIRG CNVLAEETKE CINRGDQYVN YSHIVLRGGG SRGGLNDDGR GWGVSLEERI
     NASVLSIPEC GACQFCVDPS TNKICIQRRY VRDVLVQEEM AKVPTTSPVP SSDSKSSKAK
     SLGPSASSKV RKKPGPKPGS KKSGPKPKKA RTTSPKPDAQ RSESQLAGDP MEVEHLDPAS
     QPPQKEKKKP GPKPKKAEPK SESEKRKSGG FKMSVPENLL PEFAKLIGVD GTNLRNDIIN
     DFTATHPNTS ARQVTIKFSE MATKNRPETA KEAPKQGGRG RAVWYYLRPM FYHLLEESER
     PSGWEEAAKV DNALYEKEIA EKERATAEKK LKASMKAKDA NDGMTTMTSS AANTDDEVGS
     TVSSKF
//
DBGET integrated database retrieval system