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Database: UniProt
Entry: K3XYQ0_SETIT
LinkDB: K3XYQ0_SETIT
Original site: K3XYQ0_SETIT 
ID   K3XYQ0_SETIT            Unreviewed;       278 AA.
AC   K3XYQ0;
DT   28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT   28-NOV-2012, sequence version 1.
DT   24-JAN-2024, entry version 58.
DE   RecName: Full=Transcription initiation factor IIE subunit beta {ECO:0000256|PIRNR:PIRNR016398};
GN   Name=101786967 {ECO:0000313|EnsemblPlants:KQL09001};
GN   ORFNames=SETIT_4G010100v2 {ECO:0000313|EMBL:RCV19863.1};
OS   Setaria italica (Foxtail millet) (Panicum italicum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX   NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:KQL09001, ECO:0000313|Proteomes:UP000004995};
RN   [1] {ECO:0000313|EMBL:RCV19863.1, ECO:0000313|Proteomes:UP000004995}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL09001,
RC   ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC   {ECO:0000313|EMBL:RCV19863.1};
RX   PubMed=22580951; DOI=10.1038/nbt.2196;
RA   Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA   Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA   Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA   Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA   Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA   Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT   "Reference genome sequence of the model plant Setaria.";
RL   Nat. Biotechnol. 30:555-561(2012).
RN   [2] {ECO:0000313|EMBL:RCV19863.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Yugu1 {ECO:0000313|EMBL:RCV19863.1};
RA   Noorani M.;
RL   Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EnsemblPlants:KQL09001}
RP   IDENTIFICATION.
RC   STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL09001};
RG   EnsemblPlants;
RL   Submitted (AUG-2018) to UniProtKB.
CC   -!- FUNCTION: Recruits TFIIH to the initiation complex and stimulates the
CC       RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase
CC       activities of TFIIH. Both TFIIH and TFIIE are required for promoter
CC       clearance by RNA polymerase. {ECO:0000256|ARBA:ARBA00025581,
CC       ECO:0000256|PIRNR:PIRNR016398}.
CC   -!- SUBUNIT: Tetramer of two alpha and two beta chains.
CC       {ECO:0000256|PIRNR:PIRNR016398}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR016398}.
CC   -!- SIMILARITY: Belongs to the TFIIE beta subunit family.
CC       {ECO:0000256|PIRNR:PIRNR016398}.
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DR   EMBL; AGNK02002175; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CM003531; RCV19863.1; -; Genomic_DNA.
DR   RefSeq; XP_004964333.1; XM_004964276.2.
DR   AlphaFoldDB; K3XYQ0; -.
DR   STRING; 4555.K3XYQ0; -.
DR   EnsemblPlants; KQL09001; KQL09001; SETIT_007058mg.
DR   GeneID; 101786967; -.
DR   Gramene; KQL09001; KQL09001; SETIT_007058mg.
DR   KEGG; sita:101786967; -.
DR   eggNOG; KOG3095; Eukaryota.
DR   HOGENOM; CLU_065682_0_0_1; -.
DR   InParanoid; K3XYQ0; -.
DR   OMA; NDDPRSK; -.
DR   OrthoDB; 453982at2759; -.
DR   Proteomes; UP000004995; Chromosome IV.
DR   GO; GO:0005673; C:transcription factor TFIIE complex; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR   InterPro; IPR040501; TFA2_Winged_2.
DR   InterPro; IPR016656; TFIIE-bsu.
DR   InterPro; IPR003166; TFIIE_bsu_DNA-bd.
DR   PANTHER; PTHR12716:SF16; TFA2_WINGED_2 DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR12716; TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT; 1.
DR   Pfam; PF18121; TFA2_Winged_2; 1.
DR   Pfam; PF02186; TFIIE_beta; 1.
DR   PIRSF; PIRSF016398; TFIIE-beta; 1.
DR   PROSITE; PS51351; TFIIE_BETA_C; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR016398};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PIRNR:PIRNR016398};
KW   Reference proteome {ECO:0000313|Proteomes:UP000004995};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|PIRNR:PIRNR016398};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW   ECO:0000256|PIRNR:PIRNR016398}.
FT   DOMAIN          58..133
FT                   /note="TFIIE beta"
FT                   /evidence="ECO:0000259|PROSITE:PS51351"
FT   REGION          27..48
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          233..278
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   278 AA;  31760 MW;  39B7872BC9816734 CRC64;
     MDLKDSLSRF KQQQERCQSS LASIALTSKP KHRAQPINAP SVPARPSKPI KFSNDTERLQ
     HINSIRKSPV GAQMKLVIEL LYKTRQAFTA EQINEATYVD IHGNKAVFNS LRNNPKIQYD
     GRRFSYKSKH DLNGKDQLLV LIRKFAEGLA VVEIKDAYPT VMEDLQALKA AGEVWLLSNM
     DSQEDIVYPN DPKNKIKVDD DLKQLFRDIE LPRDMVDVEK ELQKNGFKPM TNTAKRRAAA
     QIDGVKPKPK AKKKQREITK RTKLTNAHLP ELFENLNT
//
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