ID K4A7V4_SETIT Unreviewed; 561 AA.
AC K4A7V4;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 24-JAN-2024, entry version 60.
DE RecName: Full=Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071};
GN Name=101786196 {ECO:0000313|EnsemblPlants:KQK92434};
GN ORFNames=SETIT_9G528900v2 {ECO:0000313|EMBL:RCV46404.1};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EMBL:RCV46404.1};
RN [1] {ECO:0000313|EMBL:RCV46404.1, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQK92434,
RC ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC {ECO:0000313|EMBL:RCV46404.1};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EMBL:RCV46404.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Yugu1 {ECO:0000313|EMBL:RCV46404.1};
RA Noorani M.;
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK92434}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQK92434};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108}.
CC -!- SIMILARITY: Belongs to the TALE/BELL homeobox family.
CC {ECO:0000256|ARBA:ARBA00006454}.
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DR EMBL; AGNK02006121; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM003536; RCV46404.1; -; Genomic_DNA.
DR EMBL; CM003536; RCV46405.1; -; Genomic_DNA.
DR EMBL; CM003536; RCV46406.1; -; Genomic_DNA.
DR RefSeq; XP_004985591.1; XM_004985534.3.
DR RefSeq; XP_004985592.1; XM_004985535.3.
DR RefSeq; XP_004985593.1; XM_004985536.3.
DR RefSeq; XP_004985594.1; XM_004985537.3.
DR AlphaFoldDB; K4A7V4; -.
DR EnsemblPlants; KQK92434; KQK92434; SETIT_034965mg.
DR EnsemblPlants; KQK92435; KQK92435; SETIT_034965mg.
DR EnsemblPlants; KQK92436; KQK92436; SETIT_034965mg.
DR GeneID; 101786196; -.
DR Gramene; KQK92434; KQK92434; SETIT_034965mg.
DR Gramene; KQK92435; KQK92435; SETIT_034965mg.
DR Gramene; KQK92436; KQK92436; SETIT_034965mg.
DR KEGG; sita:101786196; -.
DR eggNOG; KOG0773; Eukaryota.
DR HOGENOM; CLU_011058_6_0_1; -.
DR InParanoid; K4A7V4; -.
DR OMA; FMNASED; -.
DR OrthoDB; 3180467at2759; -.
DR Proteomes; UP000004995; Chromosome IX.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR008422; Homeobox_KN_domain.
DR InterPro; IPR006563; POX_dom.
DR PANTHER; PTHR11850:SF139; HOMEOBOX DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR11850; HOMEOBOX PROTEIN TRANSCRIPTION FACTORS; 1.
DR Pfam; PF05920; Homeobox_KN; 1.
DR Pfam; PF07526; POX; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00574; POX; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Reference proteome {ECO:0000313|Proteomes:UP000004995}.
FT DOMAIN 320..383
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DNA_BIND 322..384
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 166..205
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 396..432
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 166..198
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 405..426
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 561 AA; 60559 MW; 7496CA8FFA5E35AA CRC64;
MATFFSASAD QRDLAAAGDM FHHYTTSNPY SDSPTGGLMP FPATIVSEGH VAHCGDGRDE
PASFVNARDG PTSGAGMGLQ TQLLMANAST AQHQGLSLSL GTQGVPVSLY QYRQAGMAAA
SLLSPGQTTT ASRSAQSIYI QNSKYLKAAR ELLDEVVNVR DAIKRKGDKN QSNKDSGEGK
DAEKSEEKAE EHEGNSSAEL TPSERQDLQN KVSALMALLD QVDRKYRHYH HQMQIVMSSF
DAVAGAGAAR PYTALALQTI SRHFRSLRDA IGAQVQSLRR SLGEKDTSAQ GGGLSRLRYI
DQQLRQQRAM QQFGMMQQPQ HAWRPQRGLP ESAVSVLRAW LFEHFLHPYP KDSEKLMLAR
QTGLSRGQVS NWFINARVRL WKPMIEEMYK EEFGAEMDSH SSSENAGNKG KDEAISSEDH
DEFQSPSSAA KHGTAAGHLN AFKSEAIGGM DAGGAIGSYT TSLNLGAVGN GSSSSSLLQD
ALAHHHSDPR FVAYGDMVGL GGYDGGSVSL TLGLQHCNDA GAVPAEQPGL LYGNAGDFEF
MNASEDRQRF GSSQLLHDFV A
//
