ID K4CXT4_SOLLC Unreviewed; 439 AA.
AC K4CXT4;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE SubName: Full=DEAD-box RNA helicases protein {ECO:0000313|EMBL:AIE13827.1, ECO:0000313|EnsemblPlants:Solyc10g007550.3.1};
GN Name=101257016 {ECO:0000313|EnsemblPlants:Solyc10g007550.3.1};
GN Synonyms=DEAD31 {ECO:0000313|EMBL:AIE13827.1};
OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum;
OC Solanum subgen. Lycopersicon.
OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc10g007550.3.1};
RN [1] {ECO:0000313|EnsemblPlants:Solyc10g007550.3.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc10g007550.3.1};
RX PubMed=22660326; DOI=10.1038/nature11119;
RG Tomato Genome Consortium;
RT "The tomato genome sequence provides insights into fleshy fruit
RT evolution.";
RL Nature 485:635-641(2012).
RN [2] {ECO:0000313|EMBL:AIE13827.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=26241658;
RA Zhu M., Chen G., Dong T., Wang L., Zhang J., Zhao Z., Hu Z.;
RT "SlDEAD31, a Putative DEAD-Box RNA Helicase Gene, Regulates Salt and
RT Drought Tolerance and Stress-Related Genes in Tomato.";
RL PLoS ONE 10:E0133849-E0133849(2015).
RN [3] {ECO:0000313|EnsemblPlants:Solyc10g007550.3.1}
RP IDENTIFICATION.
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc10g007550.3.1};
RG EnsemblPlants;
RL Submitted (JAN-2019) to UniProtKB.
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX47/RRP3
CC subfamily. {ECO:0000256|ARBA:ARBA00024350}.
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DR EMBL; KJ713393; AIE13827.1; -; mRNA.
DR RefSeq; NP_001287925.1; NM_001300996.2.
DR RefSeq; NP_001315126.1; NM_001328197.1.
DR RefSeq; NP_001315127.1; NM_001328198.1.
DR AlphaFoldDB; K4CXT4; -.
DR SMR; K4CXT4; -.
DR STRING; 4081.K4CXT4; -.
DR PaxDb; 4081-Solyc10g007550-2-1; -.
DR EnsemblPlants; Solyc10g007550.3.1; Solyc10g007550.3.1; Solyc10g007550.3.
DR GeneID; 101257016; -.
DR Gramene; Solyc10g007550.3.1; Solyc10g007550.3.1; Solyc10g007550.3.
DR KEGG; sly:101257016; -.
DR eggNOG; KOG0330; Eukaryota.
DR HOGENOM; CLU_003041_1_1_1; -.
DR InParanoid; K4CXT4; -.
DR OMA; GIGIKCC; -.
DR OrthoDB; 149428at2759; -.
DR Proteomes; UP000004994; Chromosome 10.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0044238; P:primary metabolic process; IEA:UniProt.
DR CDD; cd17954; DEADc_DDX47; 1.
DR CDD; cd18787; SF2_C_DEAD; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR044765; DDX47/Rrp3_DEADc.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR PANTHER; PTHR47959; ATP-DEPENDENT RNA HELICASE RHLE-RELATED; 1.
DR PANTHER; PTHR47959:SF21; RNA HELICASE; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51195; Q_MOTIF; 1.
PE 2: Evidence at transcript level;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU000492};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000256|RuleBase:RU000492};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU000492};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW ECO:0000256|RuleBase:RU000492};
KW Reference proteome {ECO:0000313|Proteomes:UP000004994}.
FT DOMAIN 9..37
FT /note="DEAD-box RNA helicase Q"
FT /evidence="ECO:0000259|PROSITE:PS51195"
FT DOMAIN 40..211
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 238..382
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 400..439
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 9..37
FT /note="Q motif"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00552"
FT COMPBIAS 400..426
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 439 AA; 48898 MW; 66D296C63FE7FEE8 CRC64;
MDESKEETKS FKELGVCDQL IEACDNLGWK NPSKIQAEAM PHAFEGKDLI GLAQTGSGKT
GAFAIPILQS LLDSPHAFFA CVLSPTRELA IQIAEQFEAL GSGIGVKCAV LVGGIDQVQQ
SIALGKRPHI VVATPGRLLD HLSNTKGFSL RTIKYLVLDE ADRLLNEDFE KALDQILNAI
PHERRTYLFS ATMTKKVRKL QRACLRNPVK IEAASKYSTV DTLKQQYRFL PAKYKDCYLI
YILTEMSGST SMVFTRTCDA TRLLALMLRN LGLRAIPISG QMTQDKRLGA LNKFKAGECN
ILICTDVASR GLDIPSVDMV INYDIPTNSK DYIHRVGRTA RAGRSGVAIS LVNQYELEWY
IQIEKLIGKK LPEYPAEEEE VLLLLERVTE AKRISLMKIK ETGGKRKHRG GGDDGDDQEV
HKYLGVNKKG KQSKKPKRK
//
