ID K4KH52_SIMAS Unreviewed; 312 AA.
AC K4KH52;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230};
GN Name=rbgA {ECO:0000313|EMBL:AFU97268.1};
GN OrderedLocusNames=M5M_00155 {ECO:0000313|EMBL:AFU97268.1};
OS Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Cellvibrionales;
OC Cellvibrionaceae; Simiduia.
OX NCBI_TaxID=1117647 {ECO:0000313|EMBL:AFU97268.1, ECO:0000313|Proteomes:UP000000466};
RN [1] {ECO:0000313|EMBL:AFU97268.1, ECO:0000313|Proteomes:UP000000466}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 21679 / JCM 13881 / BCRC 17597 / SA1
RC {ECO:0000313|Proteomes:UP000000466};
RX PubMed=23405302; DOI=10.1128/genomeA.00039-12;
RA Lin S.Y., Shieh W.Y., Chen J.S., Tang S.L.;
RT "Complete genome sequence of Simiduia agarivorans SA1(T), a marine
RT bacterium able to degrade a variety of polysaccharides.";
RL Genome Announc. 1:E00039-E00039(2013).
CC -!- FUNCTION: Required for a late step of 50S ribosomal subunit assembly.
CC Has GTPase activity. {ECO:0000256|PIRNR:PIRNR006230}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|PIRNR:PIRNR006230}.
CC -!- SIMILARITY: Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1
CC subfamily. {ECO:0000256|PIRNR:PIRNR006230}.
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DR EMBL; CP003746; AFU97268.1; -; Genomic_DNA.
DR RefSeq; WP_015045441.1; NZ_ATUQ01000015.1.
DR AlphaFoldDB; K4KH52; -.
DR STRING; 1117647.M5M_00155; -.
DR KEGG; saga:M5M_00155; -.
DR eggNOG; COG1161; Bacteria.
DR HOGENOM; CLU_011106_1_0_6; -.
DR OrthoDB; 9779790at2; -.
DR Proteomes; UP000000466; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR CDD; cd01856; YlqF; 1.
DR Gene3D; 1.10.1580.10; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR006073; GTP-bd.
DR InterPro; IPR023179; GTP-bd_ortho_bundle_sf.
DR InterPro; IPR019991; GTP-bd_ribosome_bgen.
DR InterPro; IPR016478; GTPase_MTG1.
DR InterPro; IPR027417; P-loop_NTPase.
DR NCBIfam; TIGR03596; GTPase_YlqF; 1.
DR PANTHER; PTHR45782; MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1; 1.
DR PANTHER; PTHR45782:SF4; MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1; 1.
DR Pfam; PF01926; MMR_HSR1; 1.
DR PIRSF; PIRSF006230; MG442; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|PIRNR:PIRNR006230};
KW GTP-binding {ECO:0000256|PIRNR:PIRNR006230, ECO:0000256|PIRSR:PIRSR006230-
KW 1};
KW Nucleotide-binding {ECO:0000256|PIRNR:PIRNR006230,
KW ECO:0000256|PIRSR:PIRSR006230-1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000466}.
FT DOMAIN 118..188
FT /note="G"
FT /evidence="ECO:0000259|Pfam:PF01926"
FT BINDING 125..130
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000256|PIRSR:PIRSR006230-1"
FT BINDING 169
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000256|PIRSR:PIRSR006230-1"
SQ SEQUENCE 312 AA; 34671 MW; 5A1F1058C11AEB1D CRC64;
MSIQWYPGHM HKARKQMLEL LPRIDVLVEI LDARVPHSSQ NPVIAEACTH LPVIKLLSKD
DLADPAMTQA WQTHFEQQDN TRTLAVDLRM PGKLKSLIPE LVRKLAPTKA EQNRTINVLV
AGIPNVGKST FINTMAGRPA AKTGNEPAVT KAQQQINLED GVILFDSPGM LWPKLEHNNT
GFRLAATSAI KNTVIDFEDL GLYLADYLLP NYPEGLKERY GLKSLPKDSL GLISAVCQRR
GGMKANEVDY YKGGEILVSD FRAARLGRIT LETPEVIAQE LLEVEQARAL KAERDAEKEA
KKALKKAGKR HT
//
