ID K7LMQ4_SOYBN Unreviewed; 160 AA.
AC K7LMQ4;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE RecName: Full=MBD domain-containing protein {ECO:0000259|PROSITE:PS50982};
GN Name=102669254 {ECO:0000313|EnsemblPlants:KRH27959};
GN ORFNames=GLYMA_11G025500 {ECO:0000313|EMBL:KRH27959.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH27959};
RN [1] {ECO:0000313|EMBL:KRH27959.1, ECO:0000313|EnsemblPlants:KRH27959}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH27959};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH27959.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH27959}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH27959};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH27959.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH27959.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000844; KRH27959.1; -; Genomic_DNA.
DR RefSeq; XP_014619264.1; XM_014763778.1.
DR AlphaFoldDB; K7LMQ4; -.
DR SMR; K7LMQ4; -.
DR STRING; 3847.K7LMQ4; -.
DR PaxDb; 3847-GLYMA11G02765-1; -.
DR EnsemblPlants; KRH27959; KRH27959; GLYMA_11G025500.
DR GeneID; 102669254; -.
DR Gramene; KRH27959; KRH27959; GLYMA_11G025500.
DR KEGG; gmx:102669254; -.
DR HOGENOM; CLU_1655271_0_0_1; -.
DR InParanoid; K7LMQ4; -.
DR OrthoDB; 509339at2759; -.
DR Proteomes; UP000008827; Chromosome 11.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR038945; MBD13-like.
DR InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR PANTHER; PTHR34067; OS04G0193200 PROTEIN; 1.
DR PANTHER; PTHR34067:SF20; OS08G0206700 PROTEIN; 1.
DR Pfam; PF01429; MBD; 1.
DR SUPFAM; SSF54171; DNA-binding domain; 2.
DR PROSITE; PS50982; MBD; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 77..149
FT /note="MBD"
FT /evidence="ECO:0000259|PROSITE:PS50982"
SQ SEQUENCE 160 AA; 18197 MW; D76F8CF6E72CD162 CRC64;
MGHGYKCYIA PSGHKFYSKP EVLRYLDTVN INSNSHTSKK EKICKSNDTV EKSTIEDLPP
GQIKEVKIRK GSNDNRDVVE KSPVEDLPPG WITEAKVRKG DTGNRKDMFY IDPVSGYVFR
SKKDALRYVK SGDISTCVLK PYKKLIQDED KITVRILCLI
//
