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Entry: L0HJ08_METFS
LinkDB: L0HJ08_METFS
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ID   L0HJ08_METFS            Unreviewed;       104 AA.
AC   L0HJ08;
DT   06-MAR-2013, integrated into UniProtKB/TrEMBL.
DT   06-MAR-2013, sequence version 1.
DT   24-JAN-2024, entry version 55.
DE   RecName: Full=Transcription factor S {ECO:0000256|ARBA:ARBA00018272};
DE   AltName: Full=Transcription elongation factor IIS/RNA polymerase subunit homolog {ECO:0000256|ARBA:ARBA00032962};
GN   OrderedLocusNames=Metfor_2283 {ECO:0000313|EMBL:AGB03288.1};
OS   Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).
OC   Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia;
OC   Methanomicrobiales; Methanoregulaceae; Methanoregula.
OX   NCBI_TaxID=593750 {ECO:0000313|EMBL:AGB03288.1, ECO:0000313|Proteomes:UP000010824};
RN   [1] {ECO:0000313|Proteomes:UP000010824}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 22288 / NBRC 105244 / SMSP
RC   {ECO:0000313|Proteomes:UP000010824};
RA   Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA   Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R.,
RA   Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Imachi H.,
RA   Tamaki H., Sekiguchi Y., Kamagata Y., Cadillo-Quiroz H., Zinder S.,
RA   Liu W.-T., Woyke T.;
RT   "Complete sequence of Methanoregula formicicum SMSP.";
RL   Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:AGB03288.1, ECO:0000313|Proteomes:UP000010824}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 22288 / NBRC 105244 / SMSP
RC   {ECO:0000313|Proteomes:UP000010824};
RX   PubMed=25189582;
RA   Yamamoto K., Tamaki H., Cadillo-Quiroz H., Imachi H., Kyrpides N.,
RA   Woyke T., Goodwin L., Zinder S.H., Kamagata Y., Liu W.T.;
RT   "Complete Genome Sequence of Methanoregula formicica SMSPT, a Mesophilic
RT   Hydrogenotrophic Methanogen Isolated from a Methanogenic Upflow Anaerobic
RT   Sludge Blanket Reactor.";
RL   Genome Announc. 2:e00870-14(2014).
CC   -!- SIMILARITY: Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11
CC       RNA polymerase family. {ECO:0000256|PIRNR:PIRNR005586,
CC       ECO:0000256|RuleBase:RU003474}.
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DR   EMBL; CP003167; AGB03288.1; -; Genomic_DNA.
DR   RefSeq; WP_015286251.1; NC_019943.1.
DR   AlphaFoldDB; L0HJ08; -.
DR   STRING; 593750.Metfor_2283; -.
DR   GeneID; 14309675; -.
DR   KEGG; mfo:Metfor_2283; -.
DR   eggNOG; arCOG00579; Archaea.
DR   HOGENOM; CLU_093932_3_2_2; -.
DR   InParanoid; L0HJ08; -.
DR   OMA; MEFCDEC; -.
DR   OrthoDB; 72957at2157; -.
DR   Proteomes; UP000010824; Chromosome.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd10511; Zn-ribbon_TFS; 1.
DR   Gene3D; 2.20.25.10; -; 1.
DR   Gene3D; 2.20.70.10; -; 1.
DR   InterPro; IPR019761; DNA-dir_RNA_pol-M_15_CS.
DR   InterPro; IPR001529; DNA-dir_RNA_pol_M/15kDasu.
DR   InterPro; IPR012164; Rpa12/Rpb9/Rpc10/TFS.
DR   InterPro; IPR006288; TFS.
DR   InterPro; IPR001222; Znf_TFIIS.
DR   NCBIfam; TIGR01384; TFS_arch; 1.
DR   PANTHER; PTHR11239; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR11239:SF12; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10; 1.
DR   Pfam; PF02150; RNA_POL_M_15KD; 1.
DR   Pfam; PF01096; TFIIS_C; 1.
DR   PIRSF; PIRSF005586; RNApol_RpoM; 1.
DR   SMART; SM00661; RPOL9; 1.
DR   SMART; SM00440; ZnF_C2C2; 1.
DR   SUPFAM; SSF57783; Zinc beta-ribbon; 1.
DR   PROSITE; PS01030; RNA_POL_M_15KD; 1.
DR   PROSITE; PS00466; ZF_TFIIS_1; 1.
DR   PROSITE; PS51133; ZF_TFIIS_2; 1.
PE   3: Inferred from homology;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723,
KW   ECO:0000256|PIRSR:PIRSR005586-1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000010824};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|PIRNR:PIRNR005586};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PIRSR:PIRSR005586-1};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PIRSR:PIRSR005586-
KW   2}.
FT   DOMAIN          61..101
FT                   /note="TFIIS-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51133"
FT   ZN_FING         3..22
FT                   /note="C4-type"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-2"
FT   BINDING         3
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         6
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         19
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         22
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         65
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         68
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         93
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
FT   BINDING         96
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR005586-1"
SQ   SEQUENCE   104 AA;  12304 MW;  F51D0282A7EB2EC9 CRC64;
     MFCPECKSLM ISSGGQLKCR KCGYIRKIES TDNMTKKRER VEKEIMIVDD EGEKIKTLPT
     TQIKCPKCGN NLAFWWLRQL RAADESEVRF FKCTECDHTW RQYD
//
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