ID L7VXG6_9BACT Unreviewed; 437 AA.
AC L7VXG6;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 13-SEP-2023, entry version 29.
DE SubName: Full=RNA polymerase sigma-54 factor RpoN {ECO:0000313|EMBL:AGC72319.1};
OS uncultured bacterium A1Q1_fos_1093.
OC Bacteria; environmental samples.
OX NCBI_TaxID=1256542 {ECO:0000313|EMBL:AGC72319.1};
RN [1] {ECO:0000313|EMBL:AGC72319.1}
RP NUCLEOTIDE SEQUENCE.
RA Abrams M., Caldwell A., Vandaei E., Lee W., Perrott J., Khan S.Y., Ta J.,
RA Romero D., Nguyen V., Pourmand N., Ouverney C.C.;
RT "Metagenomic Characterization of a Microbial Community in Wastewater
RT Detects High Levels of Antibiotic Resistance.";
RL Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; JX649898; AGC72319.1; -; Genomic_DNA.
DR AlphaFoldDB; L7VXG6; -.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 109..302
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 314..401
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 41..76
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 412..437
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..76
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 437 AA; 49659 MW; 2A7F13F74099B9B8 CRC64;
MLNLIQSQKQ TLKISPAQIQ LLNFLQLNTL ELEQHIKNEL EENPILEEGP EETADESGAT
DEFGVKDNSD DRTQDYMDWD EFKDDDVPDY RTRITNYNDD ENTYAPSLVE SITWRHELKE
QFHLLPLTER QQILSDFLVD SLTDEGYLTY SAEALSDDVS FTSGIYVEVE EIKELIEVLR
KMEPAGLGAR NLQDCLLLQL ERRHDDEVGV AKELIKKHFD DLAARNYEKL MRACGLTSPQ
LKETLELIAT LNPQPVTAGG QTETLIVKDN IVPDYIVTVE GDLIDVELNN RRVPPLRVNK
AYANEVGGTR AANTYINSKI NAANWLIDAI QQRENTMLKS MRAIVKLQAD YFRTGDVRVL
KPMVLRDIAE RIQMDVSTIS RVTSGKYAQT PFGVIHSPQR FVYGRSSYAK RRRSVQPSDS
TCFGRIGGAG RQEKPAE
//
