ID L9JBP5_TUPCH Unreviewed; 569 AA.
AC L9JBP5;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE SubName: Full=Transcription factor SOX-13 {ECO:0000313|EMBL:ELW47714.1};
GN ORFNames=TREES_T100003428 {ECO:0000313|EMBL:ELW47714.1};
OS Tupaia chinensis (Chinese tree shrew).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia.
OX NCBI_TaxID=246437 {ECO:0000313|EMBL:ELW47714.1, ECO:0000313|Proteomes:UP000011518};
RN [1] {ECO:0000313|Proteomes:UP000011518}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Zhang G., Fan Y., Yao Y., Huang Z.;
RT "Genome of the Chinese tree shrew, a rising model animal genetically
RT related to primates.";
RL Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000011518}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23385571; DOI=10.1038/ncomms2416;
RA Fan Y., Huang Z.Y., Cao C.C., Chen C.S., Chen Y.X., Fan D.D., He J.,
RA Hou H.L., Hu L., Hu X.T., Jiang X.T., Lai R., Lang Y.S., Liang B.,
RA Liao S.G., Mu D., Ma Y.Y., Niu Y.Y., Sun X.Q., Xia J.Q., Xiao J.,
RA Xiong Z.Q., Xu L., Yang L., Zhang Y., Zhao W., Zhao X.D., Zheng Y.T.,
RA Zhou J.M., Zhu Y.B., Zhang G.J., Wang J., Yao Y.G.;
RT "Genome of the Chinese tree shrew.";
RL Nat. Commun. 4:1426-1426(2013).
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DR EMBL; KB321094; ELW47714.1; -; Genomic_DNA.
DR AlphaFoldDB; L9JBP5; -.
DR STRING; 246437.L9JBP5; -.
DR eggNOG; KOG0528; Eukaryota.
DR InParanoid; L9JBP5; -.
DR Proteomes; UP000011518; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd22030; HMG-box_SoxD; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR45789; FI18025P1; 1.
DR PANTHER; PTHR45789:SF4; TRANSCRIPTION FACTOR SOX-13; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00267}; Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000011518}.
FT DOMAIN 371..439
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 371..439
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 1..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 247..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 529..569
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 128..165
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 247..261
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 529..547
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 569 AA; 63388 MW; D78767B292D1469A CRC64;
MVNCTIKSEE KKEPAHEVPQ ASATAAEPQP GDPARASQDS ADLQAPAQVP ALSRGLLVVP
AIEKLLSSDW KERFLGRNSV ETKDVKGTQE SLAEKELQLL VMTHQLSTLR DQLLTAHAEQ
KNMAAMLFEK QQQQMELARQ QQEQIAKQQQ QLIQQQHKIN LLQQQIQQVN MPYVMIPAFP
PSHQPLPVTP DSQLALPIQP VPCKPVEYPL PLLHGPPAPV LKRPGAVAAH HPLQESSQPL
NLTAKPKATE LSNTSSSPGL KLSGCGPRPP SHGAPMRDLQ SSPPGLPLGF LGEGDAVTKA
IQDARQLLHS HSGALEGSPS TPFRKDLINL DSSPAKERLE ESCVHPLEEA MLSCDVDGSR
PFPESRHNSH IKRPMNAFMV WAKDERRKIL QAFPDMHNSS ISKILGSRWK SMTNQEKQPY
YEEQARLSRQ HLEKYPDYKY KPRPKRTCIV EGKRLRVGEY KALMRTRRQD ARQSYVIPPQ
AGQVQMSSSE VLYPRAAGMP LAQQLVEHYV PQSLDPNMPV IVNTCSLREE GEGADDRHSV
ADGEMYRYSE DEDSEGEEKS DGELVVLTD
//
