ID L9U807_9GAMM Unreviewed; 602 AA.
AC L9U807;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 08-NOV-2023, entry version 53.
DE SubName: Full=RNA polymerase sigma factor 54, interaction {ECO:0000313|EMBL:ELY20771.1};
GN ORFNames=HALTITAN_2446 {ECO:0000313|EMBL:ELY20771.1};
OS Halomonas titanicae BH1.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales;
OC Halomonadaceae; Halomonas.
OX NCBI_TaxID=1204738 {ECO:0000313|EMBL:ELY20771.1, ECO:0000313|Proteomes:UP000011651};
RN [1] {ECO:0000313|EMBL:ELY20771.1, ECO:0000313|Proteomes:UP000011651}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BH1 {ECO:0000313|EMBL:ELY20771.1,
RC ECO:0000313|Proteomes:UP000011651};
RX PubMed=23516210;
RA Sanchez-Porro C., de la Haba R.R., Cruz-Hernandez N., Gonzalez J.M.,
RA Reyes-Guirao C., Navarro-Sampedro L., Carballo M., Ventosa A.;
RT "Draft Genome of the Marine Gammaproteobacterium Halomonas titanicae.";
RL Genome Announc. 1:E0008313-E0008313(2013).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ELY20771.1}.
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DR EMBL; AOPO01000012; ELY20771.1; -; Genomic_DNA.
DR RefSeq; WP_009287970.1; NZ_AOPO01000012.1.
DR AlphaFoldDB; L9U807; -.
DR PATRIC; fig|1204738.3.peg.3709; -.
DR Proteomes; UP000011651; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.1380.20; Trafficking protein particle complex subunit 3; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR024096; NO_sig/Golgi_transp_ligand-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR InterPro; IPR004096; V4R.
DR InterPro; IPR010523; XylR_N.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR Pfam; PF02830; V4R; 1.
DR Pfam; PF06505; XylR_N; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00989; V4R; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF111126; Ligand-binding domain in the NO signalling and Golgi transport; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 259..488
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 526..547
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..20
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 602 AA; 66179 MW; FB37B4C947DBA192 CRC64;
MTKKMTLSKM TTQPNQASSC EIGLDDGDPP TLRDLTERLR LTPNDGKIWF DDRRMVLLGA
NAFGVLRREI IESLGFSRAC SLLMRVGFSA GSADAAFVRK HWPLNDEAGA LTAGERLHAV
MGMVKVETVR RDHDIPNGIF NAEFLWHGSI EAAEHINAYG LSREPVCWMQ LGYASGYASA
FYGKRVIYRE LECAGCGGSF CRIVGEMTNQ EIGSTHDLSW LTPGEYLAPE ARKSSRQTTG
VTTASSPASI HEKIDTQKIV GISAAVSIAL QKIERVAPTP ATVLFNGESG VGKDLFANEL
HRKSNLANGP FVALNCAAIP DTLVEAELFG VEKGAFTGAE KSRPGRFERA NGGTLFLDEI
PSLSYEAQGK LLRTLQNGEI ERVGGAHPIQ VNVRVVAASN KDLFKEVQNG LFREDLYYRL
NVFPIRLPPL RERQDDIPLL IEHFLYRYSN VYKKNIPGLT RKASEALLDY SYPGNIRELQ
NLIERGVINA LDSEPLNVFH MFDDVGFATK LNPPGQSGLN IDPTGELEAG TSGPDLLGRG
KLDDTQKSAK CHRRSEAEIL SNALYKTDGN VSKAARELGV TRAKLAYRIQ KAGLDPSLFR
HL
//
