ID L9W356_9EURY Unreviewed; 702 AA.
AC L9W356;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE SubName: Full=PAS/PAC sensor protein {ECO:0000313|EMBL:ELY43721.1};
GN ORFNames=C495_12954 {ECO:0000313|EMBL:ELY43721.1};
OS Natronorubrum sulfidifaciens JCM 14089.
OC Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales;
OC Natrialbaceae; Natronorubrum.
OX NCBI_TaxID=1230460 {ECO:0000313|EMBL:ELY43721.1, ECO:0000313|Proteomes:UP000011661};
RN [1] {ECO:0000313|EMBL:ELY43721.1, ECO:0000313|Proteomes:UP000011661}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 14089 {ECO:0000313|EMBL:ELY43721.1,
RC ECO:0000313|Proteomes:UP000011661};
RX PubMed=25393412; DOI=10.1371/journal.pgen.1004784;
RA Becker E.A., Seitzer P.M., Tritt A., Larsen D., Krusor M., Yao A.I., Wu D.,
RA Madern D., Eisen J.A., Darling A.E., Facciotti M.T.;
RT "Phylogenetically driven sequencing of extremely halophilic archaea reveals
RT strategies for static and dynamic osmo-response.";
RL PLoS Genet. 10:E1004784-E1004784(2014).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ELY43721.1}.
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DR EMBL; AOHX01000042; ELY43721.1; -; Genomic_DNA.
DR RefSeq; WP_008163547.1; NZ_AOHX01000042.1.
DR AlphaFoldDB; L9W356; -.
DR STRING; 1230460.C495_12954; -.
DR PATRIC; fig|1230460.4.peg.2635; -.
DR eggNOG; arCOG02276; Archaea.
DR eggNOG; arCOG06712; Archaea.
DR OrthoDB; 165911at2157; -.
DR Proteomes; UP000011661; Unassembled WGS sequence.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR031803; BAT_GAF/HTH-assoc.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR007050; HTH_bacterioopsin.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR00229; sensory_box; 2.
DR PANTHER; PTHR34236; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR PANTHER; PTHR34236:SF1; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR Pfam; PF15915; BAT; 1.
DR Pfam; PF13185; GAF_2; 1.
DR Pfam; PF04967; HTH_10; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF13426; PAS_9; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000011661};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 171..241
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 244..296
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 290..317
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 702 AA; 78298 MW; 7F30F80F6278C6DC CRC64;
MTPLFPDDSD DSEESPPRSS GVDIPSTFSL DVRQLADLVS EYAVSILDAD GRLVRWNDHD
SQLTGDDELE GTPYRTFFPP AKREAGHPAH LLEQARTDGR AEDEGWRVRP DGSRFWVREV
LVPIRDHDHG LDLGHVGEAD ADGQPAPLWG YLRILHDRTD EYKRERELRE KKALTESIFE
AQPDLLYAFG TDGNLVQWNG RFEQVTGYDA DDLEGKRALE FIVPEDREHI RDAIDRVLHD
GDRVTAEGRV LTSDGRRIPF EFNSARITGA DGIVFGFTGV GRDVSDRKAR ERELERLERL
NATIRTIDET MVTAETREAV ETAIVDAFAA ADPYQFAVIG QGDIASTGGT QPLEPRSWAG
TDAAGAADML STFVEPPADG PGASPFETET VQCYHSLREH SIDRWRADAR ERDYGSVAAV
PITASGRTFG VLLVAAKDAV AFADREREVL QEFGATVGHA LNAMAVRRLL YLDTAVELEF
ESTDHRDVCT ELSSTLGCRL SLDHVLPLTE EVFVYYVSVT GIDPDTVQTF TDEHAEIGEV
RHIDTSGDES YWELVVYGPT ITSLLADYGA RMRSQIIDDG VSSIVVQASP DVAVRELVSA
ISETYPETEL LSKRTVERPV ETRGDFRRRV QDRLTDKQRA ALEAAYYGGY FEWPTRNSDA
SEIAERLGIA RQTFHQHLRV AQAKLLTTYF EDRTAVNGER SD
//