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Database: UniProt
Entry: L9W356_9EURY
LinkDB: L9W356_9EURY
Original site: L9W356_9EURY 
ID   L9W356_9EURY            Unreviewed;       702 AA.
AC   L9W356;
DT   03-APR-2013, integrated into UniProtKB/TrEMBL.
DT   03-APR-2013, sequence version 1.
DT   24-JAN-2024, entry version 47.
DE   SubName: Full=PAS/PAC sensor protein {ECO:0000313|EMBL:ELY43721.1};
GN   ORFNames=C495_12954 {ECO:0000313|EMBL:ELY43721.1};
OS   Natronorubrum sulfidifaciens JCM 14089.
OC   Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales;
OC   Natrialbaceae; Natronorubrum.
OX   NCBI_TaxID=1230460 {ECO:0000313|EMBL:ELY43721.1, ECO:0000313|Proteomes:UP000011661};
RN   [1] {ECO:0000313|EMBL:ELY43721.1, ECO:0000313|Proteomes:UP000011661}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=JCM 14089 {ECO:0000313|EMBL:ELY43721.1,
RC   ECO:0000313|Proteomes:UP000011661};
RX   PubMed=25393412; DOI=10.1371/journal.pgen.1004784;
RA   Becker E.A., Seitzer P.M., Tritt A., Larsen D., Krusor M., Yao A.I., Wu D.,
RA   Madern D., Eisen J.A., Darling A.E., Facciotti M.T.;
RT   "Phylogenetically driven sequencing of extremely halophilic archaea reveals
RT   strategies for static and dynamic osmo-response.";
RL   PLoS Genet. 10:E1004784-E1004784(2014).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:ELY43721.1}.
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DR   EMBL; AOHX01000042; ELY43721.1; -; Genomic_DNA.
DR   RefSeq; WP_008163547.1; NZ_AOHX01000042.1.
DR   AlphaFoldDB; L9W356; -.
DR   STRING; 1230460.C495_12954; -.
DR   PATRIC; fig|1230460.4.peg.2635; -.
DR   eggNOG; arCOG02276; Archaea.
DR   eggNOG; arCOG06712; Archaea.
DR   OrthoDB; 165911at2157; -.
DR   Proteomes; UP000011661; Unassembled WGS sequence.
DR   CDD; cd00130; PAS; 2.
DR   Gene3D; 3.30.450.40; -; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 2.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR031803; BAT_GAF/HTH-assoc.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR007050; HTH_bacterioopsin.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR000700; PAS-assoc_C.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013656; PAS_4.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR00229; sensory_box; 2.
DR   PANTHER; PTHR34236; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR   PANTHER; PTHR34236:SF1; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR   Pfam; PF15915; BAT; 1.
DR   Pfam; PF13185; GAF_2; 1.
DR   Pfam; PF04967; HTH_10; 1.
DR   Pfam; PF08448; PAS_4; 1.
DR   Pfam; PF13426; PAS_9; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF55781; GAF domain-like; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
DR   PROSITE; PS50113; PAC; 1.
DR   PROSITE; PS50112; PAS; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000011661};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          171..241
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          244..296
FT                   /note="PAC"
FT                   /evidence="ECO:0000259|PROSITE:PS50113"
FT   REGION          1..25
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          290..317
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   702 AA;  78298 MW;  7F30F80F6278C6DC CRC64;
     MTPLFPDDSD DSEESPPRSS GVDIPSTFSL DVRQLADLVS EYAVSILDAD GRLVRWNDHD
     SQLTGDDELE GTPYRTFFPP AKREAGHPAH LLEQARTDGR AEDEGWRVRP DGSRFWVREV
     LVPIRDHDHG LDLGHVGEAD ADGQPAPLWG YLRILHDRTD EYKRERELRE KKALTESIFE
     AQPDLLYAFG TDGNLVQWNG RFEQVTGYDA DDLEGKRALE FIVPEDREHI RDAIDRVLHD
     GDRVTAEGRV LTSDGRRIPF EFNSARITGA DGIVFGFTGV GRDVSDRKAR ERELERLERL
     NATIRTIDET MVTAETREAV ETAIVDAFAA ADPYQFAVIG QGDIASTGGT QPLEPRSWAG
     TDAAGAADML STFVEPPADG PGASPFETET VQCYHSLREH SIDRWRADAR ERDYGSVAAV
     PITASGRTFG VLLVAAKDAV AFADREREVL QEFGATVGHA LNAMAVRRLL YLDTAVELEF
     ESTDHRDVCT ELSSTLGCRL SLDHVLPLTE EVFVYYVSVT GIDPDTVQTF TDEHAEIGEV
     RHIDTSGDES YWELVVYGPT ITSLLADYGA RMRSQIIDDG VSSIVVQASP DVAVRELVSA
     ISETYPETEL LSKRTVERPV ETRGDFRRRV QDRLTDKQRA ALEAAYYGGY FEWPTRNSDA
     SEIAERLGIA RQTFHQHLRV AQAKLLTTYF EDRTAVNGER SD
//
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