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Database: UniProt
Entry: M0ZNU3_SOLTU
LinkDB: M0ZNU3_SOLTU
Original site: M0ZNU3_SOLTU 
ID   M0ZNU3_SOLTU            Unreviewed;      1176 AA.
AC   M0ZNU3;
DT   03-APR-2013, integrated into UniProtKB/TrEMBL.
DT   03-APR-2013, sequence version 1.
DT   24-JAN-2024, entry version 43.
DE   SubName: Full=Nonsense-mediated mRNA decay protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400004710};
OS   Solanum tuberosum (Potato).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX   NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400004710, ECO:0000313|Proteomes:UP000011115};
RN   [1] {ECO:0000313|Proteomes:UP000011115}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX   PubMed=21743474; DOI=10.1038/nature10158;
RG   The Potato Genome Sequencing Consortium;
RT   "Genome sequence and analysis of the tuber crop potato.";
RL   Nature 475:189-195(2011).
RN   [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400004710}
RP   IDENTIFICATION.
RC   STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400004710};
RG   EnsemblPlants;
RL   Submitted (JUN-2015) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC   -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC       {ECO:0000256|ARBA:ARBA00007913}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01341}.
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DR   AlphaFoldDB; M0ZNU3; -.
DR   EnsemblPlants; PGSC0003DMT400004710; PGSC0003DMT400004710; PGSC0003DMG400001863.
DR   Gramene; PGSC0003DMT400004710; PGSC0003DMT400004710; PGSC0003DMG400001863.
DR   Proteomes; UP000011115; Unassembled WGS sequence.
DR   ExpressionAtlas; M0ZNU3; baseline.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0016787; F:hydrolase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR   CDD; cd21407; 1B_UPF1-like; 1.
DR   CDD; cd18039; DEXXQc_UPF1; 1.
DR   CDD; cd18808; SF1_C_Upf1; 1.
DR   CDD; cd21400; ZBD_UPF1-like; 1.
DR   Gene3D; 2.40.30.230; -; 1.
DR   Gene3D; 6.10.140.1240; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR045055; DNA2/NAM7-like.
DR   InterPro; IPR041679; DNA2/NAM7-like_C.
DR   InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR   InterPro; IPR006935; Helicase/UvrB_N.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR047187; SF1_C_Upf1.
DR   InterPro; IPR040812; UPF1_1B_dom.
DR   InterPro; IPR018999; UPF1_CH/ZBD.
DR   PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR   PANTHER; PTHR10887:SF499; HELICASE ATP-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF13086; AAA_11; 1.
DR   Pfam; PF13087; AAA_12; 1.
DR   Pfam; PF04851; ResIII; 1.
DR   Pfam; PF18141; UPF1_1B_dom; 1.
DR   Pfam; PF09416; UPF1_Zn_bind; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS51997; UPF1_CH_RICH; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW   ProRule:PRU01341}; Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU01341};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU01341}.
FT   DOMAIN          128..287
FT                   /note="Upf1"
FT                   /evidence="ECO:0000259|PROSITE:PS51997"
FT   REGION          1..93
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          198..228
FT                   /note="C4"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT   REGION          952..995
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1024..1099
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..26
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        46..93
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        954..979
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1050..1099
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1176 AA;  129713 MW;  A822C54BEEFB7BEF CRC64;
     MDSQSNSLYD TASQPDTGND AYTFLEFNTQ GEEFDYPEFH ELSQPIRSSA WPTPSDSLVS
     EAPDRPQSSS DASQASGKSR GGDGGRSSSS KISSNKAAAV AVDALAAGMS GLNFEETGDD
     ESFEYGKGDF AVEHACKYCG VTNPACVVRC NVPSCRKWFC NSRGNTSGSH IVNHLVRAKH
     KEVCLHKDSP LGETILECYN CGCRNVFLLG FISAKTESVV VLLCREPCLN VNALKDMNWD
     LSQWCPLIDD RCFLQWLVKV PSEQEQLRAR QISAQQINKI EELWKTNPDA NLEDLEKPGV
     DDEPQPVGLK YEDAYQYQNI FAPLIKLEAD YDKMMKESQS KDNLTVRWDI GLNKKRVAYF
     VFPKEDNELR LVPGDELRLR YSGDAAHPAW QSVGHVIKLT AQEEVALELR ASQGVPVDVT
     HGLSVDFVWK STSFDRMQTA MKTFAVDETS VSGYIYHHLL GHEVEMQMVR NTVPRRFGAP
     GLPELNASQV FAVKSVLQKP VSLIQGPPGT GKTVTSAAIV YHMAKQGQGQ VLVCAPSNVA
     VDQLAEKISA TGLKVVRLCA KSREAVSSPV EHLTLHYQVR HLDTSEKSEL YKLQQLKDEQ
     GELSSGDEKK YKALKRATER EIAQSADVIC CTCVGAGDPR LANFRFRQVL IDESTQAGEP
     ECLIPLVLGA KQIVLVGDHC QLGPVIMCKK AARAGLAQSL FERLVLLGVK PIRLQVQYRM
     HPALSEFPSN SFYEGTLQNG VTINERQSLG IDFPWPVPNR PMFFYVQMGQ EEISSSGTSY
     LNRTEAASVE KLVTTFLKSG VVPSQIGVIT PYEGQRAYIV NYMSRNGALR QQLYKEIEVA
     SVDSFQGREK DYIILSCVRS NEHQGIGFLN DPRRLNVALT RARYGIVILG NPKVLSKQPL
     WNGLLTHYKE HECLVEGPLN NLKQSMVQFQ KPKKIYNDRR LFFGGGPGIV PSDNYGSPAS
     SNPNADRRSS HSRGSYMAPG PSNGTHRPGV YSSGYPMPRV PISPYHGGPP QPYAIPARDA
     IHGPVGAVPH VPHPGNRGFG AGRGNANAPI GSHLSHQQAS QQPIGSHGPN FNFSALENPN
     TQPSGGGPLS QPGYASNMAI QGPSQTFRDG FSMGGMSQVI DFVNHCCLLR QVSHLSFNFL
     IRISWEMISR ARDPMFHIML LTSLHRLLKA DMLLIM
//
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