ID M1B595_SOLTU Unreviewed; 546 AA.
AC M1B595;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=Transcription initiation factor tfiid {ECO:0000313|EnsemblPlants:PGSC0003DMT400037351};
GN Name=102598962 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037351};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037351, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037351}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037351};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF6 family.
CC {ECO:0000256|ARBA:ARBA00007688}.
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DR RefSeq; XP_006352529.1; XM_006352467.2.
DR AlphaFoldDB; M1B595; -.
DR STRING; 4113.M1B595; -.
DR PaxDb; 4113-PGSC0003DMT400037351; -.
DR EnsemblPlants; PGSC0003DMT400037351; PGSC0003DMT400037351; PGSC0003DMG400014413.
DR GeneID; 102598962; -.
DR Gramene; PGSC0003DMT400037351; PGSC0003DMT400037351; PGSC0003DMG400014413.
DR Gramene; RHC10H1G0258.2.1; RHC10H1G0258.2.1; RHC10H1G0258.2.
DR KEGG; sot:102598962; -.
DR eggNOG; KOG2549; Eukaryota.
DR HOGENOM; CLU_021711_1_0_1; -.
DR InParanoid; M1B595; -.
DR OMA; YFVQFIA; -.
DR OrthoDB; 1529at2759; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR ExpressionAtlas; M1B595; baseline.
DR GO; GO:0000124; C:SAGA complex; IEA:InterPro.
DR GO; GO:0046695; C:SLIK (SAGA-like) complex; IEA:InterPro.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IEA:InterPro.
DR GO; GO:0003713; F:transcription coactivator activity; IBA:GO_Central.
DR GO; GO:0051123; P:RNA polymerase II preinitiation complex assembly; IBA:GO_Central.
DR CDD; cd08050; TAF6C; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR Gene3D; 1.25.40.770; TAF6, C-terminal HEAT repeat domain; 1.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR037796; TAF6.
DR InterPro; IPR011442; TAF6_C.
DR InterPro; IPR046344; TAF6_C_sf.
DR InterPro; IPR004823; TAF_TATA-bd_Histone-like_dom.
DR PANTHER; PTHR10221; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR PANTHER; PTHR10221:SF9; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR Pfam; PF02969; TAF; 1.
DR Pfam; PF07571; TAF6_C; 1.
DR SMART; SM00803; TAF; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 2..68
FT /note="TATA box binding protein associated factor (TAF)
FT histone-like fold"
FT /evidence="ECO:0000259|SMART:SM00803"
SQ SEQUENCE 546 AA; 61231 MW; 046CCCB5057BA1B9 CRC64;
MSIVPKETIE VISQSIGVSN LSPDVLPALA VDVEYRIREI MQEAIKCMHH SKRTTLSTDD
VDAALSLRGV EPIYGFASGD PLRFRRAAGH KDLFYIEEKD VEFKDVIEAP LPKAPLDAAV
VAHWLAIEGV QPAIPENPLP EALAMPSDTR NTEYKEDGVP VDIKVPVKHV LSRELQLYYE
KIKELTVDRS NPLLFKEALR SLATDSGIHP VVPYFTYFIS DEVSRNLNNF PLLFALMRLL
WSLLQNTQIH IEPYLHQLMP SIMTCLVARR LGNRLSDNHW ELRDFSATLV ALICKRYGRV
YHNLQSRVTS TLLHAFLDPT KALPQHYGAI QGLAALGPGV VRLLVLPNLE AYLQLLEPEM
QPEKQKNEMK RFEAWRVYGA LMCAAGLCIY ERFKLLPASL SPSTRTFLKS KWKVSTTLSS
KRKASLDNMM TQPPPKRLMT DGPISSMTAN SLPVSTQGPA VGYAVTPRVT ETGVSSASHG
LQHNENILRT IGRRDMTAGQ GQKTSVLLDQ AWKEDLDAVR LLPSLFECFG ERMFTFTPSP
ELAFFL
//
