ID M1CH20_SOLTU Unreviewed; 674 AA.
AC M1CH20;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400067302};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400067302, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400067302}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400067302};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR AlphaFoldDB; M1CH20; -.
DR STRING; 4113.M1CH20; -.
DR PaxDb; 4113-PGSC0003DMT400067302; -.
DR EnsemblPlants; PGSC0003DMT400067302; PGSC0003DMT400067302; PGSC0003DMG400026172.
DR Gramene; PGSC0003DMT400067302; PGSC0003DMT400067302; PGSC0003DMG400026172.
DR Gramene; RHC07H1G1658.2.1; RHC07H1G1658.2.1.cds.1; RHC07H1G1658.2.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; M1CH20; -.
DR OMA; WTAMIDC; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR ExpressionAtlas; M1CH20; baseline.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR24015:SF1672; OS06G0506100 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 5.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 134..168
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 268..302
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 370..404
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 471..505
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 572..606
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 1..35
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 674 AA; 75331 MW; BD80A5DA221D4C07 CRC64;
MISCNLIPLP SKTNLEPPRD TQDRPSSRAN HHAHNLRFSR HIKEPSKYPK HNNLPNLLSV
HTKNPHAIYK DIQRFAHQNK LKEALTILDY LDHRGIPVNP TTFASLIAAV VRLKSLTSAK
IVHTHVIING LENNEFLQTK VVNMYAACGS IEDAKKVFDK MPVRSVYPWN ALLRGNVVLG
GSKYGEVLGT FSDMRGLGVE LNVYSFSCLI KSFAGASALF QGLKTHGLLI KNGFLGSEIV
STSLIDMYFK CGKVRLAHRV FEEVEERDVV MWGAMIAGFA HNKLQREALE YTRLMIKEGL
EVNSVILTTI LPVIGEARAS KLGKEVHAYV IKTKEYSKQL FIQSGLVDMY SKCGDIVAGR
KVFYGSKERN AISWTALISG YILNGRLEQA LRSILWMQQE GFKPDLVTVA TVLPVCGKLK
ELKYGKEIHA YAVKNGFLPN ASVSTCLMMM YSKCGLLQYS SRVFDSMEKR NVISWTAMMD
SYIDSGCLEE ALGVFRSMQL SKHRADSVAM GRILSVCGKL RLLKLGREIH GQILKKDIAS
VPFVSAELVK MYGSCGSIDK SKVSFDLIPV KGSMTWTAII EAYGLSGQYG AAINEFKQMI
SKGFNPNHFT FKVVFSICEK AGFADEGCQF FTMMTRKYKI KASEDHYTSI INLLHHVGRI
EEAEKFVLLK QSSA
//
