ID M1VAM8_CYAM1 Unreviewed; 895 AA.
AC M1VAM8;
DT 01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 01-MAY-2013, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE RecName: Full=polyribonucleotide nucleotidyltransferase {ECO:0000256|ARBA:ARBA00012416};
DE EC=2.7.7.8 {ECO:0000256|ARBA:ARBA00012416};
GN ORFNames=CYME_CMQ324C {ECO:0000313|EMBL:BAM82189.1};
OS Cyanidioschyzon merolae (strain NIES-3377 / 10D) (Unicellular red alga).
OC Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae;
OC Cyanidioschyzon.
OX NCBI_TaxID=280699 {ECO:0000313|EMBL:BAM82189.1, ECO:0000313|Proteomes:UP000007014};
RN [1] {ECO:0000313|EMBL:BAM82189.1, ECO:0000313|Proteomes:UP000007014}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=10D {ECO:0000313|EMBL:BAM82189.1,
RC ECO:0000313|Proteomes:UP000007014};
RX PubMed=15071595; DOI=10.1038/nature02398;
RA Matsuzaki M., Misumi O., Shin-i T., Maruyama S., Takahara M.,
RA Miyagishima S., Mori T., Nishida K., Yagisawa F., Nishida K., Yoshida Y.,
RA Nishimura Y., Nakao S., Kobayashi T., Momoyama Y., Higashiyama T.,
RA Minoda A., Sano M., Nomoto H., Oishi K., Hayashi H., Ohta F., Nishizaka S.,
RA Haga S., Miura S., Morishita T., Kabeya Y., Terasawa K., Suzuki Y.,
RA Ishii Y., Asakawa S., Takano H., Ohta N., Kuroiwa H., Tanaka K.,
RA Shimizu N., Sugano S., Sato N., Nozaki H., Ogasawara N., Kohara Y.,
RA Kuroiwa T.;
RT "Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon
RT merolae 10D.";
RL Nature 428:653-657(2004).
RN [2] {ECO:0000313|EMBL:BAM82189.1, ECO:0000313|Proteomes:UP000007014}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=10D {ECO:0000313|EMBL:BAM82189.1,
RC ECO:0000313|Proteomes:UP000007014};
RX PubMed=17623057; DOI=10.1186/1741-7007-5-28;
RA Nozaki H., Takano H., Misumi O., Terasawa K., Matsuzaki M., Maruyama S.,
RA Nishida K., Yagisawa F., Yoshida Y., Fujiwara T., Takio S., Tamura K.,
RA Chung S.J., Nakamura S., Kuroiwa H., Tanaka K., Sato N., Kuroiwa T.;
RT "A 100%-complete sequence reveals unusually simple genomic features in the
RT hot-spring red alga Cyanidioschyzon merolae.";
RL BMC Biol. 5:28-28(2007).
CC -!- SIMILARITY: Belongs to the polyribonucleotide nucleotidyltransferase
CC family. {ECO:0000256|ARBA:ARBA00007404}.
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DR EMBL; AP006499; BAM82189.1; -; Genomic_DNA.
DR RefSeq; XP_005538225.1; XM_005538168.1.
DR AlphaFoldDB; M1VAM8; -.
DR STRING; 280699.M1VAM8; -.
DR EnsemblPlants; CMQ324CT; CMQ324CT; CMQ324C.
DR GeneID; 16996288; -.
DR Gramene; CMQ324CT; CMQ324CT; CMQ324C.
DR KEGG; cme:CYME_CMQ324C; -.
DR eggNOG; KOG1067; Eukaryota.
DR HOGENOM; CLU_004217_2_2_1; -.
DR OMA; KCASFNA; -.
DR OrthoDB; 937144at2759; -.
DR Proteomes; UP000007014; Chromosome 17.
DR GO; GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:UniProtKB-EC.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:InterPro.
DR CDD; cd02393; KH-I_PNPase; 1.
DR CDD; cd00164; S1_like; 1.
DR Gene3D; 3.30.230.70; GHMP Kinase, N-terminal domain; 2.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR001247; ExoRNase_PH_dom1.
DR InterPro; IPR015847; ExoRNase_PH_dom2.
DR InterPro; IPR036345; ExoRNase_PH_dom2_sf.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012162; PNPase.
DR InterPro; IPR027408; PNPase/RNase_PH_dom_sf.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR003029; S1_domain.
DR PANTHER; PTHR11252; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; 1.
DR PANTHER; PTHR11252:SF0; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF01138; RNase_PH; 2.
DR Pfam; PF03725; RNase_PH_C; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF55666; Ribonuclease PH domain 2-like; 2.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 2.
DR PROSITE; PS50084; KH_TYPE_1; 1.
DR PROSITE; PS50126; S1; 1.
PE 3: Inferred from homology;
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000007014};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00117};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000313|EMBL:BAM82189.1}.
FT DOMAIN 795..866
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 867..895
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 895 AA; 95938 MW; 0205EE06516207F3 CRC64;
MDWRRTLRLS TLTRTLQKRL SLRGATARLA ACSTAGPLSS VSLDAEAWAK HIQHQTGVAV
RCGFGLDFET GRLARLATGS VTVHAGSTQV LVACVLAAHR APASFAQLDA LLQQQHTAGR
LSEWQRTQEL LQTLHTAPLW VDVRERASAR GLIPTSYHRR ESAATEKEVI TARLIDRALR
PTLPRGYCIE TQLTAEVLSA DGQLDPDTLA LNGAAIALLL AFQRCFPQQV MQAQTRPRLV
AAVRIARLAQ TSTAADTVAF PPSESASMTP ARPRWIIQPS YAERLASDLD LVFAGTSDGC
CVALEGEAKA VPPEDIAEAC RLASAALEPL RQQQEALLQQ CRLAASMPGA GAGPPALFWA
MPRPQVVAEA LRHSGERLVS IYAHAPEKTE RGIAVAQESA QAVAHLRQHA ASLRSAPATD
ASSVSPGVDA VGPAEAALAV LEASREAWRQ ALQRHQHRVD GRLPREMRPM EARVQVLPSD
TCHGSALVSR GETQVLAVAT LGFPSLAKRL DAYGGGADTK QFYVHYQFPP YCNNQLGRGD
ALYRRRRREV GHGILAERAV RSVLPSDLWH AVRLEADVLA SAGSSSMAAA AAGSLALMDA
GLPLAGPVAG VSIGGILATT SAGSSATTEA YLRSPFAQDA EPCADLFLVD ILGLEDFFGD
FDCKVAGTEQ GITALQLDVK HQGLTLEQVA RALEEAHRVH HVQLEKVLRV ALPAGAARPF
LPPQAPRRGS WNLSLADRGR LLGAGGQRVR ELEQHTGCSI QLEDDGSISL WAPNAQVLEQ
ALEILQQVTR IPACGDSFHG RVLQILDFGA VIEIQPSPSS FRLQGLLHRS AFASALEWTR
VQVGDALVVR VTQVDPRTGS LRFAQVAPMD GNGVPNGTST LDERRDAASS EMPRN
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