ID M5WG02_PRUPE Unreviewed; 376 AA.
AC M5WG02;
DT 29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2013, sequence version 1.
DT 27-MAR-2024, entry version 59.
DE RecName: Full=HTH La-type RNA-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PRUPE_4G079700 {ECO:0000313|EMBL:ONI10977.1};
OS Prunus persica (Peach) (Amygdalus persica).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=3760 {ECO:0000313|EMBL:ONI10977.1, ECO:0000313|Proteomes:UP000006882};
RN [1] {ECO:0000313|EMBL:ONI10977.1, ECO:0000313|Proteomes:UP000006882}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882};
RX PubMed=23525075; DOI=10.1038/ng.2586;
RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F.,
RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A.,
RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V.,
RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., Dondini L.,
RA Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., Aramini V., Copetti D.,
RA Gonzalez S., Horner D.S., Falchi R., Lucas S., Mica E., Maldonado J.,
RA Lazzari B., Bielenberg D., Pirona R., Miculan M., Barakat A., Testolin R.,
RA Stella A., Tartarini S., Tonutti P., Arus P., Orellana A., Wells C.,
RA Main D., Vizzotto G., Silva H., Salamini F., Schmutz J., Morgante M.,
RA Rokhsar D.S.;
RT "The high-quality draft genome of peach (Prunus persica) identifies unique
RT patterns of genetic diversity, domestication and genome evolution.";
RL Nat. Genet. 45:487-494(2013).
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DR EMBL; CM007654; ONI10977.1; -; Genomic_DNA.
DR RefSeq; XP_007211445.1; XM_007211383.1.
DR AlphaFoldDB; M5WG02; -.
DR STRING; 3760.M5WG02; -.
DR EnsemblPlants; ONI10977; ONI10977; PRUPE_4G079700.
DR GeneID; 18778531; -.
DR Gramene; ONI10977; ONI10977; PRUPE_4G079700.
DR KEGG; pper:18778531; -.
DR eggNOG; KOG1855; Eukaryota.
DR HOGENOM; CLU_033595_3_1_1; -.
DR OMA; NEEDWRN; -.
DR OrthoDB; 74364at2759; -.
DR Proteomes; UP000006882; Chromosome g4.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005844; C:polysome; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd08033; LARP_6; 1.
DR CDD; cd12288; RRM_La_like_plant; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR034878; La-rel_plant_RRM.
DR InterPro; IPR045180; La_dom_prot.
DR InterPro; IPR006630; La_HTH.
DR InterPro; IPR002344; Lupus_La.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR22792:SF159; LA-RELATED PROTEIN 6A; 1.
DR PANTHER; PTHR22792; LUPUS LA PROTEIN-RELATED; 1.
DR Pfam; PF05383; La; 1.
DR Pfam; PF00076; RRM_1; 1.
DR PRINTS; PR00302; LUPUSLA.
DR SMART; SM00715; LA; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50961; HTH_LA; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006882};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
SQ SEQUENCE 376 AA; 41109 MW; 6EFE75018E97BB5C CRC64;
MEGEEGPTVT VAAPTDTAVI RSTDSPPPSP KDGSDVSPVG SPDRVSSEIQ PQPSDDDPDQ
SSGTGGLSND LKQKIIKQVE YYFSDENLPS DKHMLSLIKK NKEGFVPISV IASFRKMKKL
IRNNSLIAAA LRESSLLVVS SNGKKLKRLH PLPLPENRDA KCTVLVENLP EDHSVENLKR
IFGEAGNIKD VCILDPHAIE ASTKGSKAEK LISNKLHALV EYDTVEAADK AVTTLNNEED
WRNGMRVKHL KQMGKYGQRK QAWRGFDSEK SSGNRTSDQT GGEENHNASE HHNDTRTPDD
EDGERVPKEK NGHRGRNRGQ SGRQKYRVTN GFGHGTSSAN HGIEPSKPPP GPRMPDGTRG
FTMGRGRTLG ANSNQS
//
