ID M7XI91_RHOT1 Unreviewed; 980 AA.
AC M7XI91;
DT 29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2013, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=116 kDa u5 small nuclear ribonucleoprotein component {ECO:0000313|EMBL:EMS19863.1};
GN ORFNames=RHTO_03906 {ECO:0000313|EMBL:EMS19863.1};
OS Rhodotorula toruloides (strain NP11) (Yeast) (Rhodosporidium toruloides).
OC Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina;
OC Microbotryomycetes; Sporidiobolales; Sporidiobolaceae; Rhodotorula.
OX NCBI_TaxID=1130832 {ECO:0000313|EMBL:EMS19863.1, ECO:0000313|Proteomes:UP000016926};
RN [1] {ECO:0000313|EMBL:EMS19863.1, ECO:0000313|Proteomes:UP000016926}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NP11 {ECO:0000313|EMBL:EMS19863.1,
RC ECO:0000313|Proteomes:UP000016926};
RX PubMed=23047670; DOI=10.1038/ncomms2112;
RA Zhu Z., Zhang S., Liu H., Shen H., Lin X., Yang F., Zhou Y.J., Jin G.,
RA Ye M., Zou H., Zou H., Zhao Z.K.;
RT "A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides.";
RL Nat. Commun. 3:1112-1112(2012).
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DR EMBL; KB722665; EMS19863.1; -; Genomic_DNA.
DR RefSeq; XP_016270982.1; XM_016417575.1.
DR AlphaFoldDB; M7XI91; -.
DR GeneID; 27367919; -.
DR eggNOG; KOG0468; Eukaryota.
DR HOGENOM; CLU_002794_11_2_1; -.
DR OrthoDB; 166721at2759; -.
DR Proteomes; UP000016926; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04098; eEF2_C_snRNP; 1.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR InterPro; IPR035655; U5-116kDa_C.
DR NCBIfam; TIGR00231; small_GTP; 1.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SMART; SM00838; EFG_C; 1.
DR SMART; SM00889; EFG_IV; 1.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Ribonucleoprotein {ECO:0000313|EMBL:EMS19863.1}.
FT DOMAIN 138..345
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 1..51
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..23
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 980 AA; 109089 MW; D9407D91FCA94A02 CRC64;
MDLYDEFGNY IGPEDDLESD YSDDEAGEQR QQDGAASPTP APLRAYDEDE VEPLEGMEVD
DVPSSNAIVL HEDKTYYASA SATYGPGVET MVQEEDAQPL SVPIIEPVKT RKFRLGATTG
PERRWDDQFM MGLASNPETV RNVAIVGHLH HGKTSLVDML VAETHKIDID TDKQLRFTDT
HSLSQSRKIS IKSSPMSLVL SNTKGKSYLV NLVDTPGHSN FVDEIASAVR VADGAVVVVD
AVEGVMLTTT QTIQHLVKNR IPIVLVVNKV DRLILELRLP PGDAYFKLKQ TIEEVNTVIS
ELDPDPALRV SPERGNVAFA STQMGWCFTL KSFAKMYADT YGPMDLDQFA VRLWGNIYYH
PETRKFSRQS APGAKRGFEH FIMEPLYKLY SQVIGEDTDS LRKTLHQLGI HFKPSVYKMD
VRPLLRLVLA HFFGPPTGFV DMIVQHVPNP QQGARVKVES TYTGALDSPL GQALLNCDPE
GPLAIQIVKL YPTPDASEFR AFGRVLSGTA QVGQEVKVLG EGYSPEDEED MVVQQIGGIY
VGEARYDIET DAMPAGNFVQ LSGVDNSISK TATLIAADYD ASELRIFRPI AHFTQSVLKV
SVEPLMPSEL PKMLDGLRKV NKTYPLIETR VEESGEHVLL GTGELYLDCA MHDLRVMFAE
IEIKISDPVV RFCETVVETS ALKCYADTPN KKNKITMIAE PLERGIAEDI ETGKISIRLP
PKQLGQHFQN KYGWDLLASR SIWAFGPDDQ GPNLLMDDTL PSDVDKKLLY TVKESIKQGF
QWGCREGPLC DEPIRNVKFR LLGADLAHEP IYRGGGQIIP TARRVCYSSF LMATPRLQEP
VYFVEIQAPQ DCVPAIYEIL ARRRGHVTKD IPKPGSPLFT VQAYIPVVDA NGFETDLRTH
TLGQAFCVQT FDHWSICPGD PLDKTIQLRP LEPAPAQALA RDFVLKTRRR KGLNDQVNVA
KFLEAEMVTL LASTEHLDLL
//
