ID O08352_LISMN Unreviewed; 447 AA.
AC O08352;
DT 01-JUL-1997, integrated into UniProtKB/TrEMBL.
DT 01-JUL-1997, sequence version 1.
DT 27-MAR-2024, entry version 165.
DE SubName: Full=RNA polymerase factor sigma-54 {ECO:0000313|EMBL:EAC3882231.1};
DE SubName: Full=RNA polymerase sigma factor sigma 54 {ECO:0000313|EMBL:AHA85012.1};
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EAC5949499.1};
DE SubName: Full=Sigma-54 protein {ECO:0000313|EMBL:CAA63657.1};
GN Name=rpoN {ECO:0000313|EMBL:CAA63657.1};
GN ORFNames=AF817_13035 {ECO:0000313|EMBL:EAG6764148.1}, AP104_08875
GN {ECO:0000313|EMBL:EAC5949499.1}, APD94_12150
GN {ECO:0000313|EMBL:EAE1096713.1}, ARR48_12670
GN {ECO:0000313|EMBL:EAE1632647.1}, B4X68_09380
GN {ECO:0000313|EMBL:EAC3882231.1}, DG57_04795
GN {ECO:0000313|EMBL:EAE0769144.1}, E1W43_10975
GN {ECO:0000313|EMBL:EAE2898462.1}, FPL45_07365
GN {ECO:0000313|EMBL:ECH7211152.1}, GCV64_12930
GN {ECO:0000313|EMBL:EDH0841987.1}, GT011_13375
GN {ECO:0000313|EMBL:EDN8270335.1}, GYP27_10185
GN {ECO:0000313|EMBL:HAB7722346.1}, GYU24_13555
GN {ECO:0000313|EMBL:HAB9176734.1}, GZK27_13145
GN {ECO:0000313|EMBL:HAC3056447.1};
OS Listeria monocytogenes.
OC Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
OX NCBI_TaxID=1639 {ECO:0000313|EMBL:CAA63657.1};
RN [1] {ECO:0000313|EMBL:CAA63657.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=LO28 serovar 1/2c {ECO:0000313|EMBL:CAA63657.1};
RA Robichon D.G.E.;
RT "Characterisation of the rpoN gene from Listeria monocytogenes, involved in
RT resistance to the mesentericin Y105.";
RL Submitted (NOV-1995) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AHA85012.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DE25-2 {ECO:0000313|EMBL:AHA85053.1}, DE37-3
RC {ECO:0000313|EMBL:AHA85048.1}, DE61-2 {ECO:0000313|EMBL:AHA85045.1},
RC FE11-3 {ECO:0000313|EMBL:AHA85039.1}, FE7-3
RC {ECO:0000313|EMBL:AHA85046.1}, FE8-1 {ECO:0000313|EMBL:AHA85044.1},
RC FF1-3 {ECO:0000313|EMBL:AHA85041.1}, FF11-3
RC {ECO:0000313|EMBL:AHA85042.1}, FF46-1 {ECO:0000313|EMBL:AHA85040.1},
RC FF63-1 {ECO:0000313|EMBL:AHA85049.1}, Lm217
RC {ECO:0000313|EMBL:AHA85014.1}, Lm22/3A {ECO:0000313|EMBL:AHA85012.1},
RC Lm25/9 {ECO:0000313|EMBL:AHA85015.1}, Lm28
RC {ECO:0000313|EMBL:AHA85016.1}, Lm760 {ECO:0000313|EMBL:AHA85013.1},
RC LmE240 {ECO:0000313|EMBL:AHA85017.1}, LmE61
RC {ECO:0000313|EMBL:AHA85019.1}, and QE43-3
RC {ECO:0000313|EMBL:AHA85043.1};
RX PubMed=24549201; DOI=10.1016/j.fm.2014.01.001;
RA Arguedas-Villa C., Kovacevic J., Allen K.J., Stephan R., Tasara T.;
RT "Cold growth behaviour and genetic comparison of Canadian and Swiss
RT Listeria monocytogenes strains associated with the food supply chain and
RT human listeriosis cases.";
RL Food Microbiol. 40:81-87(2014).
RN [3] {ECO:0000313|EMBL:HAC3056447.1, ECO:0000313|Proteomes:UP000841561}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CFIAFB20140010, CFIAFB20160038, and LiDS0115
RC {ECO:0000313|EMBL:HAC3056447.1, ECO:0000313|Proteomes:UP000841561};
RX PubMed=30286803;
RA Souvorov A., Agarwala R., Lipman D.J.;
RT "SKESA: strategic k-mer extension for scrupulous assemblies.";
RL Genome Biol. 19:153-153(2018).
RN [4] {ECO:0000313|EMBL:HAB7722346.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=CFIAFB20140010 {ECO:0000313|EMBL:HAB7722346.1}, and
RC CFIAFB20160038 {ECO:0000313|EMBL:HAB9176734.1};
RA Souvorov A., Agarwala R., Lipman D.J.;
RT "SKESA: strategic k-mer extension for scrupulous assemblies.";
RL Genome Biol. 19:0-153(2018).
RN [5] {ECO:0000313|EMBL:EAC3882231.1, ECO:0000313|Proteomes:UP000356407}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CFSAN008016 {ECO:0000313|EMBL:EAE0769144.1,
RC ECO:0000313|Proteomes:UP000388699}, CFSAN060999
RC {ECO:0000313|EMBL:EAC3882231.1, ECO:0000313|Proteomes:UP000356407},
RC CFSAN085184 {ECO:0000313|EMBL:EDH0841987.1,
RC ECO:0000313|Proteomes:UP000335978}, FDA00006304
RC {ECO:0000313|EMBL:EAE1632647.1, ECO:0000313|Proteomes:UP000368805},
RC FDA00009539 {ECO:0000313|EMBL:EAC5949499.1,
RC ECO:0000313|Proteomes:UP000378540}, FDA00014472
RC {ECO:0000313|EMBL:ECH7211152.1, ECO:0000313|Proteomes:UP000352246},
RC FDA00015028 {ECO:0000313|EMBL:EDN8270335.1,
RC ECO:0000313|Proteomes:UP000467247}, and FLAG-78586
RC {ECO:0000313|EMBL:EAE1096713.1, ECO:0000313|Proteomes:UP000355989};
RG GenomeTrakr: Next Generation Sequencing Network for Food Pathogen Tracability;
RL Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:EAE2898462.1, ECO:0000313|Proteomes:UP000401273}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RL15000271 {ECO:0000313|EMBL:EAE2898462.1};
RA Ashton P.M., Dallman T., Nair S., De Pinna E., Peters T., Grant K.;
RL Submitted (MAR-2019) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|EMBL:EAG6764148.1, ECO:0000313|Proteomes:UP000535556}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NRRL B-33244 {ECO:0000313|EMBL:EAG6764148.1,
RC ECO:0000313|Proteomes:UP000535556};
RG GenomeTrakr network: Whole genome sequencing for foodborne pathogen traceback;
RL Submitted (APR-2019) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|EMBL:HAB7722346.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=CFIAFB20140010 {ECO:0000313|EMBL:HAB7722346.1}, CFIAFB20160038
RC {ECO:0000313|EMBL:HAB9176734.1}, and LiDS0115
RC {ECO:0000313|EMBL:HAC3056447.1};
RG NCBI Pathogen Detection Project;
RL Submitted (JAN-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; KF540169; AHA85012.1; -; Genomic_DNA.
DR EMBL; KF540170; AHA85013.1; -; Genomic_DNA.
DR EMBL; KF540171; AHA85014.1; -; Genomic_DNA.
DR EMBL; KF540172; AHA85015.1; -; Genomic_DNA.
DR EMBL; KF540173; AHA85016.1; -; Genomic_DNA.
DR EMBL; KF540174; AHA85017.1; -; Genomic_DNA.
DR EMBL; KF540176; AHA85019.1; -; Genomic_DNA.
DR EMBL; KF540196; AHA85039.1; -; Genomic_DNA.
DR EMBL; KF540197; AHA85040.1; -; Genomic_DNA.
DR EMBL; KF540198; AHA85041.1; -; Genomic_DNA.
DR EMBL; KF540199; AHA85042.1; -; Genomic_DNA.
DR EMBL; KF540200; AHA85043.1; -; Genomic_DNA.
DR EMBL; KF540201; AHA85044.1; -; Genomic_DNA.
DR EMBL; KF540202; AHA85045.1; -; Genomic_DNA.
DR EMBL; KF540203; AHA85046.1; -; Genomic_DNA.
DR EMBL; KF540205; AHA85048.1; -; Genomic_DNA.
DR EMBL; KF540206; AHA85049.1; -; Genomic_DNA.
DR EMBL; KF540210; AHA85053.1; -; Genomic_DNA.
DR EMBL; X93169; CAA63657.1; -; Genomic_DNA.
DR EMBL; AAAICE010000006; EAC3882231.1; -; Genomic_DNA.
DR EMBL; AAAJCR010000005; EAC5949499.1; -; Genomic_DNA.
DR EMBL; AAAQJJ010000003; EAE0769144.1; -; Genomic_DNA.
DR EMBL; AAAQOE010000004; EAE1096713.1; -; Genomic_DNA.
DR EMBL; AAAQVA010000005; EAE1632647.1; -; Genomic_DNA.
DR EMBL; AAARLF010000006; EAE2898462.1; -; Genomic_DNA.
DR EMBL; AABDDO010000004; EAG6764148.1; -; Genomic_DNA.
DR EMBL; AAISWI010000006; ECH7211152.1; -; Genomic_DNA.
DR EMBL; AAMGHX010000004; EDH0841987.1; -; Genomic_DNA.
DR EMBL; AANCZP010000004; EDN8270335.1; -; Genomic_DNA.
DR EMBL; DAAHYZ010000006; HAB7722346.1; -; Genomic_DNA.
DR EMBL; DAAIRR010000004; HAB9176734.1; -; Genomic_DNA.
DR EMBL; DAAKPP010000007; HAC3056447.1; -; Genomic_DNA.
DR PIR; AE1382; AE1382.
DR RefSeq; WP_003732487.1; NZ_VTKA01000005.1.
DR PATRIC; fig|1639.1007.peg.2476; -.
DR Proteomes; UP000335978; Unassembled WGS sequence.
DR Proteomes; UP000352246; Unassembled WGS sequence.
DR Proteomes; UP000355989; Unassembled WGS sequence.
DR Proteomes; UP000356407; Unassembled WGS sequence.
DR Proteomes; UP000368805; Unassembled WGS sequence.
DR Proteomes; UP000378540; Unassembled WGS sequence.
DR Proteomes; UP000388699; Unassembled WGS sequence.
DR Proteomes; UP000401273; Unassembled WGS sequence.
DR Proteomes; UP000467247; Unassembled WGS sequence.
DR Proteomes; UP000535556; Unassembled WGS sequence.
DR Proteomes; UP000840569; Unassembled WGS sequence.
DR Proteomes; UP000840928; Unassembled WGS sequence.
DR Proteomes; UP000841561; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50943; HTH_CROC1; 1.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 331..355
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 447 AA; 50855 MW; E92BACAF422B3472 CRC64;
MRLESNFVQK QQQKQSQKLN MTQQLSQSIA MLQFATADLV AFLEDKALEN PLIEVIPGSD
FATDFSYSSR KSAGSSDDTD WLEQIADNKM TLADALKEQL HLMDVTQTQK IIVLYLIESL
NDNGYLQIDL KDVSAALLMD DSSVLEGLEI LQSMEPAGVG ARDARECILL QIERSPDAPY
IAYDVIQKFF TEFAEKKWKK IASEMDVSLQ DIQEVSDYIQ TLNPKPGSEF ESERVQYVVP
DLILLQHEDE FAVSLAKQFL PQVRFQEAYY ETMRATEEKD VAQFLREKAG EFDWIKKGIE
QRESTLQRVG EAIVSHQKAY FLDNSAHLQP LTLKEVAEEL GVHESTVSRA VNGKYMETTN
GVYELKRFFA SGLQKKSSEN ENIGDISSTT IKKLVQEFVA AEDKLKPLSD QKIVDMLAEK
EIQVSRRAIA KYRLELNIPS SSKRKRF
//
