GenomeNet

Database: UniProt
Entry: O66169_RHIRD
LinkDB: O66169_RHIRD
Original site: O66169_RHIRD 
ID   O66169_RHIRD            Unreviewed;       323 AA.
AC   O66169;
DT   01-AUG-1998, integrated into UniProtKB/TrEMBL.
DT   01-AUG-1998, sequence version 1.
DT   24-JAN-2024, entry version 107.
DE   SubName: Full=TrbB {ECO:0000313|EMBL:AAC82628.1, ECO:0000313|EMBL:QCL98666.1};
DE   SubName: Full=Tiorf17 protein {ECO:0000313|EMBL:BAA87642.1};
GN   Name=trbB {ECO:0000313|EMBL:AAC82628.1};
GN   Synonyms=tiorf17 {ECO:0000313|EMBL:BAA87642.1};
GN   ORFNames=CFBP7129_31400 {ECO:0000313|EMBL:QCL98666.1}, CG010_027870
GN   {ECO:0000313|EMBL:QDY97952.1};
OS   Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium
OS   radiobacter).
OG   Plasmid pTi {ECO:0000313|EMBL:QDY97952.1},
OG   Plasmid pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1},
OG   Plasmid pTiC58 {ECO:0000313|EMBL:AAC82628.1},
OG   Plasmid pTiCFBP7129 {ECO:0000313|EMBL:QCL98666.1},
OG   Plasmid pti {ECO:0000313|Proteomes:UP000222296}, and
OG   Plasmid pticfbp7129 {ECO:0000313|Proteomes:UP000298649}.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
OC   Agrobacterium tumefaciens complex.
OX   NCBI_TaxID=358 {ECO:0000313|EMBL:AAC82628.1};
RN   [1] {ECO:0000313|EMBL:AAC82628.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=C58 {ECO:0000313|EMBL:AAC82628.1};
RC   PLASMID=pTiC58 {ECO:0000313|EMBL:AAC82628.1};
RX   PubMed=8197112; DOI=10.1073/pnas.91.11.4639;
RA   Hwang I., Li P.L., Zhang L., Piper K.R., Cook D.M., Tate M.E.,
RA   Farrand S.K.;
RT   "TraI, a LuxI homologue, is responsible for production of conjugation
RT   factor, the Ti plasmid N-acylhomoserine lactone autoinducer.";
RL   Proc. Natl. Acad. Sci. U.S.A. 91:4639-4643(1994).
RN   [2] {ECO:0000313|EMBL:BAA87642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=MAFF 301001 {ECO:0000313|EMBL:BAA87642.1};
RC   PLASMID=pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1};
RX   PubMed=9524202; DOI=10.1016/S0167-4781(97)00182-6;
RA   Suzuki K., Ohta N., Hattori Y., Uraji M., Katoh A., Yoshida K.;
RT   "Novel structural difference between nopaline- and octopine-type trbJ
RT   genes: construction of genetic and physical map and sequencing of trb/traI
RT   and rep gene clusters of a new Ti plasmid pTi-SAKURA.";
RL   Biochim. Biophys. Acta 1396:1-7(1998).
RN   [3] {ECO:0000313|EMBL:AAC82628.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=C58 {ECO:0000313|EMBL:AAC82628.1};
RC   PLASMID=pTiC58 {ECO:0000313|EMBL:AAC82628.1};
RX   PubMed=9829924;
RA   Li P.L., Everhart D.M., Farrand S.K.;
RT   "Genetic and sequence analysis of the pTiC58 trb locus, encoding a mating-
RT   pair formation system related to members of the type IV secretion family.";
RL   J. Bacteriol. 180:6164-6172(1998).
RN   [4] {ECO:0000313|EMBL:BAA87642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=MAFF 301001 {ECO:0000313|EMBL:BAA87642.1};
RC   PLASMID=pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1};
RA   Hattori Y., Suzuki K., Ohta N., Uraji M., Katoh A., Yoshida K.;
RT   "Genome structure of pTi-SAKURA(I): Strategy for DNA sequencing of a
RT   Japanese cherry-Ti plasmid.";
RL   Nucleic Acids Symp. Ser. 37:159-160(1998).
RN   [5] {ECO:0000313|EMBL:BAA87642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=MAFF 301001 {ECO:0000313|EMBL:BAA87642.1};
RC   PLASMID=pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1};
RA   Ohta N., Suzuki K., Hattori Y., Uraji M., Katoh A., Yoshida K.;
RT   "Genome structure of pTi-SAKURA (III): Characteristics of T-DNA.";
RL   Nucleic Acids Symp. Ser. 39:185-186(1998).
RN   [6] {ECO:0000313|EMBL:BAA87642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=MAFF 301001 {ECO:0000313|EMBL:BAA87642.1};
RC   PLASMID=pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1};
RA   Uraji M., Suzuki K., Ohta N., Hattori Y., Katoh A., Yoshida K.;
RT   "Genome structure of pTi-SAKURA (IV): Characteristics of tra region.";
RL   Nucleic Acids Symp. Ser. 39:187-188(1998).
RN   [7] {ECO:0000313|EMBL:BAA87642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=MAFF 301001 {ECO:0000313|EMBL:BAA87642.1};
RC   PLASMID=pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1};
RA   Hattori Y., Suzuki K., Ohta N., Uraji M., Katoh A., Yoshida K.;
RT   "Genome structure of pTi-SAKURA (V): Complete nucleotide sequence of
RT   plasmid pTi-SAKURA's vir region in Agrobacterium tumefaciens.";
RL   Nucleic Acids Symp. Ser. 39:265-266(1998).
RN   [8] {ECO:0000313|EMBL:AAC82628.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=C58 {ECO:0000313|EMBL:AAC82628.1};
RC   PLASMID=pTiC58 {ECO:0000313|EMBL:AAC82628.1};
RA   Li P.-L., Farrand S.K.;
RL   Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases.
RN   [9] {ECO:0000313|EMBL:BAA87642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=MAFF 301001 {ECO:0000313|EMBL:BAA87642.1};
RC   PLASMID=pTi-SAKURA {ECO:0000313|EMBL:BAA87642.1};
RX   PubMed=10721727; DOI=10.1016/S0378-1119(99)00502-8;
RA   Suzuki K., Hattori Y., Uraji M., Ohta N., Iwata K., Murata K., Katoh A.,
RA   Yoshida K.;
RT   "Complete nucleotide sequence of a plant tumor-inducing Ti plasmid.";
RL   Gene 242:331-336(2000).
RN   [10] {ECO:0000313|EMBL:QDY97952.1, ECO:0000313|Proteomes:UP000222296}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=186 {ECO:0000313|EMBL:QDY97952.1,
RC   ECO:0000313|Proteomes:UP000222296};
RC   PLASMID=pti {ECO:0000313|Proteomes:UP000222296}, and pTi
RC   {ECO:0000313|EMBL:QDY97952.1};
RX   PubMed=29146852;
RA   Poret-Peterson A.T., Bhatnagar S., McClean A.E., Kluepfel D.A.;
RT   "Draft Genome Sequence of Agrobacterium tumefaciens Biovar 1 Strain 186,
RT   Isolated from Walnut.";
RL   Genome Announc. 5:e01232-17(2017).
RN   [11] {ECO:0000313|EMBL:QCL98666.1, ECO:0000313|Proteomes:UP000298649}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CFBP7129 {ECO:0000313|EMBL:QCL98666.1,
RC   ECO:0000313|Proteomes:UP000298649};
RC   PLASMID=pticfbp7129 {ECO:0000313|Proteomes:UP000298649}, and
RC   pTiCFBP7129 {ECO:0000313|EMBL:QCL98666.1};
RA   Haryono M., Lin Y.-C., Lai E.-M., Kuo C.-H.;
RT   "Complete genome sequence of Agrobacterium tumefaciens CFBP7129.";
RL   Submitted (APR-2019) to the EMBL/GenBank/DDBJ databases.
RN   [12] {ECO:0000313|EMBL:QDY97952.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=186 {ECO:0000313|EMBL:QDY97952.1};
RC   PLASMID=pTi {ECO:0000313|EMBL:QDY97952.1};
RA   Poret-Peterson A.T., Bhatnagar S., Chen L., McClean A.E., Kluepfel D.A.;
RL   Submitted (JUL-2019) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the GSP E family.
CC       {ECO:0000256|ARBA:ARBA00006611}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AF057718; AAC82628.1; -; Genomic_DNA.
DR   EMBL; AB016260; BAA87642.1; -; Genomic_DNA.
DR   EMBL; CP039927; QCL98666.1; -; Genomic_DNA.
DR   EMBL; CP042277; QDY97952.1; -; Genomic_DNA.
DR   PIR; AG3232; AG3232.
DR   RefSeq; NP_053257.1; NC_002147.1.
DR   RefSeq; WP_010891624.1; NZ_MK439386.1.
DR   GeneID; 39477059; -.
DR   Proteomes; UP000222296; Plasmid pti.
DR   Proteomes; UP000298649; Plasmid pticfbp7129.
DR   GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   CDD; cd01130; VirB11-like_ATPase; 1.
DR   Gene3D; 3.30.450.90; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   InterPro; IPR014149; Conjug-transfer_TrbB.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001482; T2SS/T4SS_dom.
DR   NCBIfam; TIGR02782; TrbB_P; 1.
DR   PANTHER; PTHR30486; TWITCHING MOTILITY PROTEIN PILT; 1.
DR   PANTHER; PTHR30486:SF6; TYPE IV PILUS RETRACTATION ATPASE PILT; 1.
DR   Pfam; PF00437; T2SSE; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS00662; T2SP_E; 1.
PE   3: Inferred from homology;
KW   Plasmid {ECO:0000313|EMBL:AAC82628.1}.
FT   DOMAIN          212..226
FT                   /note="Bacterial type II secretion system protein E"
FT                   /evidence="ECO:0000259|PROSITE:PS00662"
SQ   SEQUENCE   323 AA;  34747 MW;  F8A97D956F1AF4FC CRC64;
     MTQLRSHSRL VRKLQDALGD QLCVALDDAT VVEIMLNPDG KLFIERLGHG VAPAGLLSPA
     AAEVIIGSVA HALQSEADDE QPIISGELPI GGHRFEGLLP PVVSGPSFTI RRRASRLIPL
     DDYVKHKIMT AAQVSVLRSA IASRMNIVIS GGTGSGKTTL ANAVIAEIVA NAPDDRIVIL
     EDTAEIQCAA ENAVALHTSD TIDMARLLKS TMRLRPDRII VGEVRDGAAL TLLKAWNTGH
     PGGVTTIHSN TAMSALRRLE QLTAEVSQQP MQEVIGEAVD LIVSIERTGK GRRVREVIHV
     EGFANARYRT EHYAQIDEDS HVA
//
DBGET integrated database retrieval system