ID O69765_PSEPU Unreviewed; 657 AA.
AC O69765;
DT 01-AUG-1998, integrated into UniProtKB/TrEMBL.
DT 01-AUG-1998, sequence version 1.
DT 13-SEP-2023, entry version 79.
DE SubName: Full=Integrase {ECO:0000313|EMBL:CAA06238.1};
GN Name=int {ECO:0000313|EMBL:CAA06238.1};
GN Synonyms=intB13 {ECO:0000313|EMBL:CAE92851.1};
OS Pseudomonas putida (Arthrobacter siderocapsulatus).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=303 {ECO:0000313|EMBL:CAA06238.1};
RN [1] {ECO:0000313|EMBL:CAA06238.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=F1 {ECO:0000313|EMBL:CAA06238.1}, and Strain RR21
RC {ECO:0000313|EMBL:CAE92851.1};
RX PubMed=9791097;
RA Ravatn R., Studer S., Zender A.J.B., van der Meer J.R.;
RT "Int-B13, an unusual site-specific recombinase of the bacteriophage P4
RT integrase family, is responsible for chromosomal insertion of the 105-
RT kilobase clc element of Pseudomonas sp. Strain B13.";
RL J. Bacteriol. 180:5505-5514(1998).
RN [2] {ECO:0000313|EMBL:CAA06238.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=F1 {ECO:0000313|EMBL:CAA06238.1};
RA Ravatn R., Zehnder A.J.B., van der Meer J.R.;
RT "Low frequency horizontal transfer of an element containing the
RT chlorocatechol degradative genes from Pseudomonas sp. strain B13 to
RT Pseudomonas putida F1 and to indigenous bacteria in laboratory scale
RT activated sludge microcosms.";
RL Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAE92851.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Strain RR21 {ECO:0000313|EMBL:CAE92851.1};
RX PubMed=12823813; DOI=10.1046/j.1365-2958.2003.03548.x;
RA Sentchilo V., Zehnder A.J.B., van der Meer J.R.;
RT "Characterization of two alternative promoters and a transcription
RT regulator for integrase expression in the clc catabolic genomic island of
RT Pseudomonas sp. strain B13.";
RL Mol. Microbiol. 49:93-104(2003).
RN [4] {ECO:0000313|EMBL:CAE92851.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Strain RR21 {ECO:0000313|EMBL:CAE92851.1};
RX PubMed=16484212; DOI=10.1128/JB.188.5.1999-2013.2006;
RA Gaillard M., Vallaeys T., Vorhoelter F.J., Minoia M., Werlen C.,
RA Sentchilo V., Puhler A., van der Meer J.R.;
RT "The clc element of Pseudomonas sp. strain B13, a genomic island with
RT various catabolic properties.";
RL J. Bacteriol. 188:1999-2013(2006).
RN [5] {ECO:0000313|EMBL:CAE92851.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Strain RR21 {ECO:0000313|EMBL:CAE92851.1};
RA van der Meer J.R.;
RL Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AJ004950; CAA06238.1; -; Genomic_DNA.
DR EMBL; AJ617740; CAE92851.1; -; Genomic_DNA.
DR AlphaFoldDB; O69765; -.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0075713; P:establishment of integrated proviral latency; IEA:UniProtKB-KW.
DR GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
DR GO; GO:0044826; P:viral genome integration into host DNA; IEA:UniProtKB-KW.
DR CDD; cd00801; INT_P4_C; 1.
DR Gene3D; 1.10.150.130; -; 1.
DR Gene3D; 3.30.160.390; Integrase, DNA-binding domain; 1.
DR Gene3D; 1.10.443.10; Intergrase catalytic core; 1.
DR InterPro; IPR044068; CB.
DR InterPro; IPR011010; DNA_brk_join_enz.
DR InterPro; IPR013762; Integrase-like_cat_sf.
DR InterPro; IPR002104; Integrase_catalytic.
DR InterPro; IPR038488; Integrase_DNA-bd_sf.
DR InterPro; IPR025166; Integrase_DNA_bind_dom.
DR InterPro; IPR010998; Integrase_recombinase_N.
DR InterPro; IPR004107; Integrase_SAM-like_N.
DR PANTHER; PTHR30629; PROPHAGE INTEGRASE; 1.
DR PANTHER; PTHR30629:SF2; PROPHAGE INTEGRASE INTS-RELATED; 1.
DR Pfam; PF13356; Arm-DNA-bind_3; 1.
DR Pfam; PF14659; Phage_int_SAM_3; 1.
DR Pfam; PF00589; Phage_integrase; 1.
DR SUPFAM; SSF56349; DNA breaking-rejoining enzymes; 1.
DR PROSITE; PS51900; CB; 1.
DR PROSITE; PS51898; TYR_RECOMBINASE; 1.
PE 4: Predicted;
KW DNA integration {ECO:0000256|ARBA:ARBA00022908};
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU01248};
KW Viral genome integration {ECO:0000256|ARBA:ARBA00023195};
KW Virus entry into host cell {ECO:0000256|ARBA:ARBA00023296}.
FT DOMAIN 112..196
FT /note="Core-binding (CB)"
FT /evidence="ECO:0000259|PROSITE:PS51900"
FT DOMAIN 221..414
FT /note="Tyr recombinase"
FT /evidence="ECO:0000259|PROSITE:PS51898"
SQ SEQUENCE 657 AA; 73940 MW; 3E221A57B1B9D864 CRC64;
MTSIGPKSLL RSLEMALSDL IVRQAKTTGK RYTLYDNDCL SLMVSAAGGK SWMFRYSWLG
KQKRMALGGY PALSLREARA ERDKAQALIA RGIDPQIERD QRRHAAKLAG EYTFKNVFDA
WVEHRRKELK EGRQSTLSQI LRIFNKDVLP TLGKMSIYDI RRPQLLGVLA AIEKRKAFTT
AEKVRTWFNQ MFRYALVIAE GLEVNPAADL DVVAEPKPPV AHNPYLHLPE LPEFLQKLRR
YNPRGWQTQL GVRLLFLTGV RTGELRLAEP EQFDLDRGFW IIPPEVVKQL QDEMRKAGKR
PQDVPPYIVP LSLQAIEIVR YLLGVMRPAQ KYLLSHRSEL KKRISENTLN KAVQLMGYEG
RLTGHGIRGT ISTALNEIGY PKIWVDAQLS HSDPNKVSSA YNHAKYVEPR RRMMQDWADR
LDLLEQGEVQ AASAHLTIRI DGVPAMAEVE EAVDVAPTVA EPGVSGSPPV AATPIVVTPN
SGGITFQRLS QVPPPPAHAP ESEVSAIQRE REEMLAMYES PNNLPVALFG KLAGKSKDQI
NRELKAGKLL SISLGNRGQR VPDWQLVPLK RRLAQALMNQ CPHVDSWALY RLLTKPHSNL
GNRAAIDVVT PTNVGKVLQA VTPYKEFERS STDETPQFSE FVRQLQRHVN ALEEAPC
//