ID YXBC_BACSU Reviewed; 330 AA.
AC P46327;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1995, sequence version 1.
DT 27-MAR-2024, entry version 118.
DE RecName: Full=Uncharacterized protein YxbC;
GN Name=yxbC; Synonyms=yxaQ; OrderedLocusNames=BSU39880; ORFNames=VE7D;
OS Bacillus subtilis (strain 168).
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168 / BGSC1A1;
RX PubMed=7584049; DOI=10.1093/dnares/2.2.61;
RA Yoshida K., Seki S., Fujimura M., Miwa Y., Fujita Y.;
RT "Cloning and sequencing of a 36-kb region of the Bacillus subtilis genome
RT between the gnt and iol operons.";
RL DNA Res. 2:61-69(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) IN COMPLEX WITH IRON IONS.
RG Joint center for structural genomics (JCSG);
RT "Crystal structure of putative asparaginyl hydroxylase (2636534) from
RT Bacillus subtilis at 2.60 A resolution.";
RL Submitted (MAR-2005) to the PDB data bank.
CC -!- COFACTOR:
CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
CC Evidence={ECO:0000250|UniProtKB:P27431, ECO:0000305|Ref.3};
CC Note=Binds 1 Fe(2+) ion per subunit. {ECO:0000250|UniProtKB:P27431,
CC ECO:0000305|Ref.3};
CC -!- SIMILARITY: Belongs to the ROX family. {ECO:0000305}.
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DR EMBL; AB005554; BAA21597.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB16024.1; -; Genomic_DNA.
DR PIR; G70072; G70072.
DR RefSeq; NP_391867.1; NC_000964.3.
DR RefSeq; WP_003243554.1; NZ_JNCM01000034.1.
DR PDB; 1VRB; X-ray; 2.60 A; A/B/C/D=1-330.
DR PDB; 7ZCC; X-ray; 1.85 A; A/B/C/D=1-330.
DR PDBsum; 1VRB; -.
DR PDBsum; 7ZCC; -.
DR AlphaFoldDB; P46327; -.
DR SMR; P46327; -.
DR STRING; 224308.BSU39880; -.
DR PaxDb; 224308-BSU39880; -.
DR EnsemblBacteria; CAB16024; CAB16024; BSU_39880.
DR GeneID; 83887901; -.
DR GeneID; 937640; -.
DR KEGG; bsu:BSU39880; -.
DR PATRIC; fig|224308.179.peg.4314; -.
DR eggNOG; COG2850; Bacteria.
DR InParanoid; P46327; -.
DR OrthoDB; 9764016at2; -.
DR PhylomeDB; P46327; -.
DR BioCyc; BSUB:BSU39880-MONOMER; -.
DR EvolutionaryTrace; P46327; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 6.10.280.40; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR039994; NO66-like.
DR PANTHER; PTHR13096; MINA53 MYC INDUCED NUCLEAR ANTIGEN; 1.
DR PANTHER; PTHR13096:SF10; RIBOSOMAL OXYGENASE 1-RELATED; 1.
DR Pfam; PF08007; JmjC_2; 1.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Iron; Metal-binding; Reference proteome.
FT CHAIN 1..330
FT /note="Uncharacterized protein YxbC"
FT /id="PRO_0000050006"
FT DOMAIN 96..256
FT /note="JmjC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00538"
FT BINDING 145
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT /evidence="ECO:0000269|Ref.3"
FT BINDING 147
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT /evidence="ECO:0000269|Ref.3"
FT BINDING 224
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT /evidence="ECO:0000269|Ref.3"
FT HELIX 10..13
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 18..24
FT /evidence="ECO:0007829|PDB:1VRB"
FT TURN 25..28
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 31..33
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 37..42
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 47..49
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 52..58
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 63..65
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 68..71
FT /evidence="ECO:0007829|PDB:1VRB"
FT TURN 72..75
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 81..83
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 85..93
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 98..100
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 103..105
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 109..120
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 129..136
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 144..146
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 148..158
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 160..165
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 187..192
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 204..210
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 215..218
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 223..227
FT /evidence="ECO:0007829|PDB:1VRB"
FT STRAND 232..239
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 244..256
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 260..263
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 274..296
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 300..304
FT /evidence="ECO:0007829|PDB:1VRB"
FT TURN 305..308
FT /evidence="ECO:0007829|PDB:1VRB"
FT HELIX 313..325
FT /evidence="ECO:0007829|PDB:1VRB"
SQ SEQUENCE 330 AA; 37458 MW; E1B399E6EA67C006 CRC64;
MSAVTESVLE SIISPVTMSE FLEEYWPVKP LVARGEVERF TSIPGFEKVR TLENVLAIYN
NPVMVVGDAV IEESEGITDR FLVSPAEALE WYEKGAALEF DFTDLFIPQV RRWIEKLKAE
LRLPAGTSSK AIVYAAKNGG GFKAHFDAYT NLIFQIQGEK TWKLAKNENV SNPMQHYDLS
EAPYYPDDLQ SYWKGDPPKE DLPDAEIVNL TPGTMLYLPR GLWHSTKSDQ ATLALNITFG
QPAWLDLMLA ALRKKLISDN RFRELAVNHQ SLHESSKSEL NGYLESLIQT LSENAETLTP
EQIFQSQDSD FDPYQSTQLV FRQLLTSYKF
//
