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Database: UniProt
Entry: P96669
LinkDB: P96669
Original site: P96669 
ID   YDEL_BACSU              Reviewed;         463 AA.
AC   P96669; Q797H9;
DT   20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-1997, sequence version 1.
DT   19-FEB-2014, entry version 95.
DE   RecName: Full=Uncharacterized HTH-type transcriptional regulator YdeL;
GN   Name=ydeL; OrderedLocusNames=BSU05240;
OS   Bacillus subtilis (strain 168).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=224308;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=168;
RA   Kasahara Y., Nakai S., Lee S., Sadaie Y., Ogasawara N.;
RT   "A 148 kbp sequence of the region between 35 and 47 degree of the
RT   Bacillus subtilis genome.";
RL   Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=168;
RX   PubMed=9384377; DOI=10.1038/36786;
RA   Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G.,
RA   Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S.,
RA   Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S.,
RA   Brouillet S., Bruschi C.V., Caldwell B., Capuano V., Carter N.M.,
RA   Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A.,
RA   Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T.,
RA   Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D.,
RA   Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N.,
RA   Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G.,
RA   Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A.,
RA   Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M.,
RA   Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M.,
RA   Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S.,
RA   Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA   Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA   Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA   Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA   Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA   Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G.,
RA   Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B.,
RA   Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R.,
RA   Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P.,
RA   Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H.,
RA   Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P.,
RA   Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F.,
RA   Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H.,
RA   Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA   Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA   Yoshikawa H., Danchin A.;
RT   "The complete genome sequence of the Gram-positive bacterium Bacillus
RT   subtilis.";
RL   Nature 390:249-256(1997).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=12123465; DOI=10.1046/j.1365-2958.2002.03036.x;
RA   Belitsky B.R., Sonenshein A.L.;
RT   "GabR, a member of a novel protein family, regulates the utilization
RT   of gamma-aminobutyrate in Bacillus subtilis.";
RL   Mol. Microbiol. 45:569-583(2002).
CC   -!- COFACTOR: Pyridoxal phosphate (By similarity).
CC   -!- SIMILARITY: In the C-terminal section; belongs to the class-I
CC       pyridoxal-phosphate-dependent aminotransferase family.
CC   -!- SIMILARITY: Contains 1 HTH gntR-type DNA-binding domain.
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DR   EMBL; AB001488; BAA19359.1; -; Genomic_DNA.
DR   EMBL; AL009126; CAB12331.1; -; Genomic_DNA.
DR   PIR; F69778; F69778.
DR   RefSeq; NP_388405.1; NC_000964.3.
DR   ProteinModelPortal; P96669; -.
DR   SMR; P96669; 10-81, 102-462.
DR   IntAct; P96669; 16.
DR   STRING; 224308.BSU05240; -.
DR   PaxDb; P96669; -.
DR   EnsemblBacteria; CAB12331; CAB12331; BSU05240.
DR   GeneID; 939904; -.
DR   KEGG; bsu:BSU05240; -.
DR   PATRIC; 18972648; VBIBacSub10457_0545.
DR   GenoList; BSU05240; -.
DR   eggNOG; COG1167; -.
DR   HOGENOM; HOG000223052; -.
DR   KO; K00375; -.
DR   OMA; TVAMEEP; -.
DR   OrthoDB; EOG689HSF; -.
DR   ProtClustDB; CLSK886766; -.
DR   BioCyc; BSUB:BSU05240-MONOMER; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
DR   Gene3D; 1.10.10.10; -; 1.
DR   Gene3D; 3.40.640.10; -; 1.
DR   InterPro; IPR004839; Aminotransferase_I/II.
DR   InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR   InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1.
DR   InterPro; IPR000524; Tscrpt_reg_HTH_GntR.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF00155; Aminotran_1_2; 1.
DR   Pfam; PF00392; GntR; 1.
DR   PRINTS; PR00035; HTHGNTR.
DR   SMART; SM00345; HTH_GNTR; 1.
DR   SUPFAM; SSF53383; SSF53383; 1.
DR   PROSITE; PS50949; HTH_GNTR; 1.
PE   3: Inferred from homology;
KW   Aminotransferase; Complete proteome; DNA-binding; Pyridoxal phosphate;
KW   Reference proteome; Transcription; Transcription regulation;
KW   Transferase.
FT   CHAIN         1    463       Uncharacterized HTH-type transcriptional
FT                                regulator YdeL.
FT                                /FTId=PRO_0000360696.
FT   DOMAIN       13     81       HTH gntR-type.
FT   DNA_BIND     41     60       H-T-H motif (By similarity).
FT   MOD_RES     308    308       N6-(pyridoxal phosphate)lysine (By
FT                                similarity).
SQ   SEQUENCE   463 AA;  53525 MW;  DBB7BA2C5D2EF8B7 CRC64;
     MDITPFLNRT LDIPLYQQLY RYFKENMHRG RIQKGMKLPS KRLLANQLSI SQTTVERAYE
     QLAAEGYIVS KPRSGWFADY HDSDFAYDRM PSTTPIQQEA EENKQWIDFH YGNVDSSYFP
     FSAWRKSMVN SLDQYGHELY RPGHVLGEFE LRTLIAEYLY QSRGVHCGPE QVIIGAGNPI
     LLQILCQVFE PNISIGYEDP GYPRARKIFE ANRMNIVPIP VDDEGICIQK IKEQQPNLVY
     VTPSHQFTLG TIMTINRRIQ LLKWAAENQS FIIEDDYDGE FRYTGQPVPS LQGLDQHNRV
     IYMGTFSKSL LPSLRISYMI LPSPLLKKGH EITSLYKQTV SCHSQLTLAE FIKNGEWQKH
     INRMRKLYRK KRAIVLEAVQ RELGEHVRIR GENSGLRILL DVYLPFGEKE LIEKAKKHGV
     KIYPVSLSYQ HHPPTKTVSL GFAGVSESDI REGIKKLKAA WKI
//
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