ID PP203_ARATH Reviewed; 590 AA.
AC O82363;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 27-MAR-2024, entry version 128.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g46050, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E39; OrderedLocusNames=At2g46050; ORFNames=T3F17.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005397; AAC62898.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10636.1; -; Genomic_DNA.
DR PIR; B84898; B84898.
DR RefSeq; NP_182129.1; NM_130168.1.
DR AlphaFoldDB; O82363; -.
DR SMR; O82363; -.
DR PaxDb; 3702-AT2G46050-1; -.
DR EnsemblPlants; AT2G46050.1; AT2G46050.1; AT2G46050.
DR GeneID; 819213; -.
DR Gramene; AT2G46050.1; AT2G46050.1; AT2G46050.
DR KEGG; ath:AT2G46050; -.
DR Araport; AT2G46050; -.
DR TAIR; AT2G46050; MEF31.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; O82363; -.
DR OMA; MYAKNEN; -.
DR OrthoDB; 445296at2759; -.
DR PhylomeDB; O82363; -.
DR PRO; PR:O82363; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O82363; baseline and differential.
DR Genevisible; O82363; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR GO; GO:0000963; P:mitochondrial RNA processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015:SF398; OS07G0259400 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..109
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 110..590
FT /note="Pentatricopeptide repeat-containing protein
FT At2g46050, mitochondrial"
FT /id="PRO_0000356062"
FT REPEAT 141..175
FT /note="PPR 1"
FT REPEAT 176..206
FT /note="PPR 2"
FT REPEAT 207..241
FT /note="PPR 3"
FT REPEAT 244..266
FT /note="PPR 4"
FT REPEAT 275..305
FT /note="PPR 5"
FT REPEAT 306..340
FT /note="PPR 6"
FT REPEAT 341..375
FT /note="PPR 7"
FT REPEAT 376..406
FT /note="PPR 8"
FT REPEAT 407..437
FT /note="PPR 9"
FT REPEAT 441..471
FT /note="PPR 10"
FT REPEAT 477..507
FT /note="PPR 11"
FT REGION 512..588
FT /note="Type E motif"
SQ SEQUENCE 590 AA; 66335 MW; 9EA5CBE81B081C5E CRC64;
MRFTFLRSTR IFLANHQNHL SSLQNIRTIP SSSSSPVAIS SVSKLSASLD HLSDVKQEHG
FMVKQGIYNS LFLQNKLLQA YTKIREFDDA DKLFDEMPLR NIVTWNILIH GVIQRDGDTN
HRAHLGFCYL SRILFTDVSL DHVSFMGLIR LCTDSTNMKA GIQLHCLMVK QGLESSCFPS
TSLVHFYGKC GLIVEARRVF EAVLDRDLVL WNALVSSYVL NGMIDEAFGL LKLMGSDKNR
FRGDYFTFSS LLSACRIEQG KQIHAILFKV SYQFDIPVAT ALLNMYAKSN HLSDARECFE
SMVVRNVVSW NAMIVGFAQN GEGREAMRLF GQMLLENLQP DELTFASVLS SCAKFSAIWE
IKQVQAMVTK KGSADFLSVA NSLISSYSRN GNLSEALLCF HSIREPDLVS WTSVIGALAS
HGFAEESLQM FESMLQKLQP DKITFLEVLS ACSHGGLVQE GLRCFKRMTE FYKIEAEDEH
YTCLIDLLGR AGFIDEASDV LNSMPTEPST HALAAFTGGC NIHEKRESMK WGAKKLLEIE
PTKPVNYSIL SNAYVSEGHW NQAALLRKRE RRNCYNPKTP GCSWLGDYSI
//
