ID PP215_ARATH Reviewed; 658 AA.
AC Q9MA85;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 27-MAR-2024, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g05340;
GN Name=PCMP-E83; OrderedLocusNames=At3g05340; ORFNames=T12H1.31;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF27040.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009177; AAF27040.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE74223.1; -; Genomic_DNA.
DR RefSeq; NP_187185.2; NM_111407.2.
DR AlphaFoldDB; Q9MA85; -.
DR SMR; Q9MA85; -.
DR PaxDb; 3702-AT3G05340-1; -.
DR ProteomicsDB; 248941; -.
DR EnsemblPlants; AT3G05340.1; AT3G05340.1; AT3G05340.
DR GeneID; 819698; -.
DR Gramene; AT3G05340.1; AT3G05340.1; AT3G05340.
DR KEGG; ath:AT3G05340; -.
DR Araport; AT3G05340; -.
DR TAIR; AT3G05340; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9MA85; -.
DR OMA; DSEMGKY; -.
DR OrthoDB; 353624at2759; -.
DR PhylomeDB; Q9MA85; -.
DR PRO; PR:Q9MA85; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9MA85; baseline and differential.
DR Genevisible; Q9MA85; AT.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF563; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..658
FT /note="Pentatricopeptide repeat-containing protein
FT At3g05340"
FT /id="PRO_0000356074"
FT REPEAT 189..219
FT /note="PPR 1"
FT REPEAT 220..254
FT /note="PPR 2"
FT REPEAT 255..289
FT /note="PPR 3"
FT REPEAT 290..320
FT /note="PPR 4"
FT REPEAT 321..355
FT /note="PPR 5"
FT REPEAT 356..390
FT /note="PPR 6"
FT REPEAT 391..421
FT /note="PPR 7"
FT REPEAT 422..456
FT /note="PPR 8"
FT REPEAT 457..492
FT /note="PPR 9"
FT REPEAT 493..523
FT /note="PPR 10"
FT REGION 528..603
FT /note="Type E motif"
FT REGION 604..634
FT /note="Type E(+) motif"
SQ SEQUENCE 658 AA; 73128 MW; BB1374231BCE0194 CRC64;
MNSRWVIQKL TSHLPSCLST VLSPSKILIR QSPNYQVSTF LLNHVDMSLL LSICGREGWF
PHLGPCLHAS IIKNPEFFEP VDADIHRNAL VVWNSLLSLY AKCGKLVDAI KLFDEMPMRD
VISQNIVFYG FLRNRETESG FVLLKRMLGS GGFDHATLTI VLSVCDTPEF CLVTKMIHAL
AILSGYDKEI SVGNKLITSY FKCGCSVSGR GVFDGMSHRN VITLTAVISG LIENELHEDG
LRLFSLMRRG LVHPNSVTYL SALAACSGSQ RIVEGQQIHA LLWKYGIESE LCIESALMDM
YSKCGSIEDA WTIFESTTEV DEVSMTVILV GLAQNGSEEE AIQFFIRMLQ AGVEIDANVV
SAVLGVSFID NSLGLGKQLH SLVIKRKFSG NTFVNNGLIN MYSKCGDLTD SQTVFRRMPK
RNYVSWNSMI AAFARHGHGL AALKLYEEMT TLEVKPTDVT FLSLLHACSH VGLIDKGREL
LNEMKEVHGI EPRTEHYTCI IDMLGRAGLL KEAKSFIDSL PLKPDCKIWQ ALLGACSFHG
DTEVGEYAAE QLFQTAPDSS SAHILIANIY SSRGKWKERA KTIKRMKAMG VTKETGISSI
EIEHKTHSFV VEDKLHPQAE AIYDVLSGLF PVMVDEGYRP DKRFILCYTG DDRNGTVS
//
