GenomeNet

Database: UniProt
Entry: PP216_ARATH
LinkDB: PP216_ARATH
Original site: PP216_ARATH 
ID   PP216_ARATH             Reviewed;         486 AA.
AC   Q9SQU6;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   24-JAN-2024, entry version 115.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At3g06430, chloroplastic;
DE   AltName: Full=Protein EMBRYO DEFECTIVE 2750;
DE   Flags: Precursor;
GN   Name=EMB2750; OrderedLocusNames=At3g06430; ORFNames=F24P17.10;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130713; DOI=10.1038/35048706;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA   Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA   Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA   Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA   Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA   Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA   Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA   Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA   Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA   Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA   Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA   Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA   Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA   Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA   Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA   Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA   Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA   Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA   Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA   Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL   Nature 408:820-822(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- INTERACTION:
CC       Q9SQU6; O23160: MYB73; NbExp=3; IntAct=EBI-4427894, EBI-25506855;
CC       Q9SQU6; Q84MB2: TIFY8; NbExp=4; IntAct=EBI-4427894, EBI-4426557;
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AC011623; AAF08573.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE74391.1; -; Genomic_DNA.
DR   EMBL; AY099616; AAM20467.1; -; mRNA.
DR   EMBL; BT006618; AAP31962.1; -; mRNA.
DR   RefSeq; NP_187294.1; NM_111518.5.
DR   AlphaFoldDB; Q9SQU6; -.
DR   SMR; Q9SQU6; -.
DR   BioGRID; 5152; 27.
DR   IntAct; Q9SQU6; 27.
DR   STRING; 3702.Q9SQU6; -.
DR   PaxDb; 3702-AT3G06430-1; -.
DR   ProteomicsDB; 249090; -.
DR   EnsemblPlants; AT3G06430.1; AT3G06430.1; AT3G06430.
DR   GeneID; 819817; -.
DR   Gramene; AT3G06430.1; AT3G06430.1; AT3G06430.
DR   KEGG; ath:AT3G06430; -.
DR   Araport; AT3G06430; -.
DR   TAIR; AT3G06430; PPR2.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_6_1; -.
DR   InParanoid; Q9SQU6; -.
DR   OMA; AWANTVT; -.
DR   OrthoDB; 1216305at2759; -.
DR   PhylomeDB; Q9SQU6; -.
DR   PRO; PR:Q9SQU6; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9SQU6; baseline and differential.
DR   GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR   GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR   GO; GO:0019843; F:rRNA binding; IDA:TAIR.
DR   GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR   GO; GO:0009553; P:embryo sac development; IMP:TAIR.
DR   GO; GO:0009555; P:pollen development; IMP:TAIR.
DR   GO; GO:0048868; P:pollen tube development; IMP:TAIR.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR044179; PPR5-like.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 7.
DR   PANTHER; PTHR47874:SF7; BNAA05G30910D PROTEIN; 1.
DR   PANTHER; PTHR47874; EXPRESSED PROTEIN; 1.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF13041; PPR_2; 4.
DR   PROSITE; PS51375; PPR; 10.
PE   1: Evidence at protein level;
KW   Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..36
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           37..486
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At3g06430, chloroplastic"
FT                   /id="PRO_0000356075"
FT   REPEAT          123..157
FT                   /note="PPR 1"
FT   REPEAT          158..188
FT                   /note="PPR 2"
FT   REPEAT          194..228
FT                   /note="PPR 3"
FT   REPEAT          229..264
FT                   /note="PPR 4"
FT   REPEAT          265..299
FT                   /note="PPR 5"
FT   REPEAT          300..334
FT                   /note="PPR 6"
FT   REPEAT          335..369
FT                   /note="PPR 7"
FT   REPEAT          370..404
FT                   /note="PPR 8"
FT   REPEAT          405..439
FT                   /note="PPR 9"
FT   REPEAT          440..470
FT                   /note="PPR 10"
SQ   SEQUENCE   486 AA;  55699 MW;  03BE4B2B0BAFB0A3 CRC64;
     MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI
     TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA KKQWLQALEV FDMLREQTFY
     QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS
     ILDKMKSFPQ CQPDVFTYST LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY
     GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
     TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD
     QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF EIPENTAFYN AVISACAKAD
     DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM
     ENLPAG
//
DBGET integrated database retrieval system