ID PP278_ARATH Reviewed; 530 AA.
AC Q0WVU0; Q9SD17;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 27-MAR-2024, entry version 97.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g51320;
GN OrderedLocusNames=At3g51320; ORFNames=F24M12.360;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB62654.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132980; CAB62654.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE78778.1; -; Genomic_DNA.
DR EMBL; AK226647; BAE98758.1; -; mRNA.
DR PIR; T45763; T45763.
DR RefSeq; NP_190700.2; NM_114991.3.
DR AlphaFoldDB; Q0WVU0; -.
DR SMR; Q0WVU0; -.
DR PaxDb; 3702-AT3G51320-1; -.
DR ProteomicsDB; 248959; -.
DR EnsemblPlants; AT3G51320.1; AT3G51320.1; AT3G51320.
DR GeneID; 824295; -.
DR Gramene; AT3G51320.1; AT3G51320.1; AT3G51320.
DR KEGG; ath:AT3G51320; -.
DR Araport; AT3G51320; -.
DR TAIR; AT3G51320; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q0WVU0; -.
DR OMA; VMILAHC; -.
DR OrthoDB; 764438at2759; -.
DR PhylomeDB; Q0WVU0; -.
DR PRO; PR:Q0WVU0; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q0WVU0; baseline and differential.
DR Genevisible; Q0WVU0; AT.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR24015:SF72; OS04G0436800 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..530
FT /note="Pentatricopeptide repeat-containing protein
FT At3g51320"
FT /id="PRO_0000356137"
FT REPEAT 82..116
FT /note="PPR 1"
FT REPEAT 117..151
FT /note="PPR 2"
FT REPEAT 152..182
FT /note="PPR 3"
FT REPEAT 183..217
FT /note="PPR 4"
FT REPEAT 218..248
FT /note="PPR 5"
FT REPEAT 249..283
FT /note="PPR 6"
FT REPEAT 284..314
FT /note="PPR 7"
FT REPEAT 315..349
FT /note="PPR 8"
FT REPEAT 350..380
FT /note="PPR 9"
FT REPEAT 386..420
FT /note="PPR 10"
FT REGION 424..499
FT /note="Type E motif"
SQ SEQUENCE 530 AA; 58985 MW; 7AFFABF17846EAA1 CRC64;
MAKASSIRQF VTSRFIVPGT GLLKGFKLVE DSNSITHLFQ VHARLITSGN FWDSSWAIRL
LKSSSRFGDS SYTVSIYRSI GKLYCANPVF KAYLVSSSPK QALGFYFDIL RFGFVPDSYT
FVSLISCIEK TCCVDSGKMC HGQAIKHGCD QVLPVQNSLM HMYTCCGALD LAKKLFVEIP
KRDIVSWNSI IAGMVRNGDV LAAHKLFDEM PDKNIISWNI MISAYLGANN PGVSISLFRE
MVRAGFQGNE STLVLLLNAC GRSARLKEGR SVHASLIRTF LNSSVVIDTA LIDMYGKCKE
VGLARRIFDS LSIRNKVTWN VMILAHCLHG RPEGGLELFE AMINGMLRPD EVTFVGVLCG
CARAGLVSQG QSYYSLMVDE FQIKPNFGHQ WCMANLYSSA GFPEEAEEAL KNLPDEDVTP
ESTKWANLLS SSRFTGNPTL GESIAKSLIE TDPLNYKYYH LLMNIYSVTG RWEDVNRVRE
MVKERKIGRI PGCGLVDLKE IVHGLRLGCK EAEKVFTETS LEKCYSDSPS
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