ID PP378_ARATH Reviewed; 752 AA.
AC Q9LYU9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 27-MAR-2024, entry version 126.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g13270, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-H90; OrderedLocusNames=At5g13270; ORFNames=T31B5_90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL163491; CAB86634.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91873.1; -; Genomic_DNA.
DR PIR; T48574; T48574.
DR RefSeq; NP_196831.1; NM_121330.2.
DR AlphaFoldDB; Q9LYU9; -.
DR SMR; Q9LYU9; -.
DR BioGRID; 16446; 1.
DR STRING; 3702.Q9LYU9; -.
DR PaxDb; 3702-AT5G13270-1; -.
DR ProteomicsDB; 249262; -.
DR EnsemblPlants; AT5G13270.1; AT5G13270.1; AT5G13270.
DR GeneID; 831168; -.
DR Gramene; AT5G13270.1; AT5G13270.1; AT5G13270.
DR KEGG; ath:AT5G13270; -.
DR Araport; AT5G13270; -.
DR TAIR; AT5G13270; RARE1.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9LYU9; -.
DR OMA; KDCHDFA; -.
DR OrthoDB; 1201390at2759; -.
DR PhylomeDB; Q9LYU9; -.
DR PRO; PR:Q9LYU9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LYU9; baseline and differential.
DR Genevisible; Q9LYU9; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015:SF811; OS01G0959600 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..80
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 81..752
FT /note="Pentatricopeptide repeat-containing protein
FT At5g13270, chloroplastic"
FT /id="PRO_0000363515"
FT REPEAT 47..81
FT /note="PPR 1"
FT REPEAT 82..116
FT /note="PPR 2"
FT REPEAT 117..147
FT /note="PPR 3"
FT REPEAT 148..182
FT /note="PPR 4"
FT REPEAT 183..217
FT /note="PPR 5"
FT REPEAT 218..248
FT /note="PPR 6"
FT REPEAT 249..283
FT /note="PPR 7"
FT REPEAT 284..318
FT /note="PPR 8"
FT REPEAT 319..349
FT /note="PPR 9"
FT REPEAT 350..384
FT /note="PPR 10"
FT REPEAT 386..420
FT /note="PPR 11"
FT REPEAT 421..451
FT /note="PPR 12"
FT REPEAT 452..486
FT /note="PPR 13"
FT REPEAT 487..522
FT /note="PPR 14"
FT REPEAT 523..553
FT /note="PPR 15"
FT REGION 558..633
FT /note="Type E motif"
FT REGION 634..664
FT /note="Type E(+) motif"
FT REGION 665..752
FT /note="Type DYW motif"
SQ SEQUENCE 752 AA; 84263 MW; 5405C8BC13F1E09C CRC64;
MTILTVQSSF SSSRVPVIKN ANFDQIPSWV SLKSSTSSPS VKISHKQGQV ENLHLVSLSK
HRKLNEAFEF LQEMDKAGVS VSSYSYQCLF EACRELRSLS HGRLLHDRMR MGIENPSVLL
QNCVLQMYCE CRSLEDADKL FDEMSELNAV SRTTMISAYA EQGILDKAVG LFSGMLASGD
KPPSSMYTTL LKSLVNPRAL DFGRQIHAHV IRAGLCSNTS IETGIVNMYV KCGWLVGAKR
VFDQMAVKKP VACTGLMVGY TQAGRARDAL KLFVDLVTEG VEWDSFVFSV VLKACASLEE
LNLGKQIHAC VAKLGLESEV SVGTPLVDFY IKCSSFESAC RAFQEIREPN DVSWSAIISG
YCQMSQFEEA VKTFKSLRSK NASILNSFTY TSIFQACSVL ADCNIGGQVH ADAIKRSLIG
SQYGESALIT MYSKCGCLDD ANEVFESMDN PDIVAWTAFI SGHAYYGNAS EALRLFEKMV
SCGMKPNSVT FIAVLTACSH AGLVEQGKHC LDTMLRKYNV APTIDHYDCM IDIYARSGLL
DEALKFMKNM PFEPDAMSWK CFLSGCWTHK NLELGEIAGE ELRQLDPEDT AGYVLPFNLY
TWAGKWEEAA EMMKLMNERM LKKELSCSWI QEKGKIHRFI VGDKHHPQTQ EIYEKLKEFD
GFMEGDMFQC NMTERREQLL DHSERLAIAF GLISVHGNAP APIKVFKNLR ACPDCHEFAK
HVSLVTGHEI VIRDSRRFHH FKEGKCSCND YW
//
