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Database: UniProt
Entry: PPR39_ARATH
LinkDB: PPR39_ARATH
Original site: PPR39_ARATH 
ID   PPR39_ARATH             Reviewed;         644 AA.
AC   Q9LPX2;
DT   01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   24-JAN-2024, entry version 116.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At1g12775, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At1g12775; ORFNames=F13K23.2;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AC012187; AAF78482.1; -; Genomic_DNA.
DR   EMBL; CP002684; AEE28927.1; -; Genomic_DNA.
DR   PIR; A86261; A86261.
DR   RefSeq; NP_001031033.1; NM_001035956.2.
DR   AlphaFoldDB; Q9LPX2; -.
DR   SMR; Q9LPX2; -.
DR   STRING; 3702.Q9LPX2; -.
DR   PaxDb; 3702-AT1G12775-1; -.
DR   ProteomicsDB; 234832; -.
DR   EnsemblPlants; AT1G12775.1; AT1G12775.1; AT1G12775.
DR   GeneID; 3766712; -.
DR   Gramene; AT1G12775.1; AT1G12775.1; AT1G12775.
DR   KEGG; ath:AT1G12775; -.
DR   Araport; AT1G12775; -.
DR   TAIR; AT1G12775; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_12_1; -.
DR   InParanoid; Q9LPX2; -.
DR   OMA; NRIYDAM; -.
DR   OrthoDB; 463517at2759; -.
DR   PhylomeDB; Q9LPX2; -.
DR   PRO; PR:Q9LPX2; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; Q9LPX2; baseline and differential.
DR   Genevisible; Q9LPX2; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 14.
DR   PANTHER; PTHR47933:SF11; PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN; 1.
DR   PANTHER; PTHR47933; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF12854; PPR_1; 2.
DR   Pfam; PF13041; PPR_2; 6.
DR   PROSITE; PS51375; PPR; 15.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..53
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           54..644
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At1g12775, mitochondrial"
FT                   /id="PRO_0000342780"
FT   REPEAT          87..121
FT                   /note="PPR 1"
FT   REPEAT          122..156
FT                   /note="PPR 2"
FT   REPEAT          157..191
FT                   /note="PPR 3"
FT   REPEAT          192..226
FT                   /note="PPR 4"
FT   REPEAT          227..261
FT                   /note="PPR 5"
FT   REPEAT          262..296
FT                   /note="PPR 6"
FT   REPEAT          297..331
FT                   /note="PPR 7"
FT   REPEAT          332..366
FT                   /note="PPR 8"
FT   REPEAT          367..401
FT                   /note="PPR 9"
FT   REPEAT          402..436
FT                   /note="PPR 10"
FT   REPEAT          437..471
FT                   /note="PPR 11"
FT   REPEAT          472..506
FT                   /note="PPR 12"
FT   REPEAT          507..541
FT                   /note="PPR 13"
FT   REPEAT          542..576
FT                   /note="PPR 14"
FT   REPEAT          577..611
FT                   /note="PPR 15"
SQ   SEQUENCE   644 AA;  72325 MW;  BF9904CAA631B3D9 CRC64;
     MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL
     SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK TKQYELVLAL CKQMESKGIA
     HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL
     VDRMVEMGHK PTLITLNTLV NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK
     SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
     YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM
     QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD PDIMTFNILI NGYCKANRID
     DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL
     DGLCDNGELE KALEIFGKIE KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK
     LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
     IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK
//
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