ID RL5_SHEFN Reviewed; 179 AA.
AC Q089P2;
DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
DT 31-OCT-2006, sequence version 1.
DT 01-MAY-2013, entry version 45.
DE RecName: Full=50S ribosomal protein L5;
GN Name=rplE; OrderedLocusNames=Sfri_0160;
OS Shewanella frigidimarina (strain NCIMB 400).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=318167;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NCIMB 400;
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T.,
RA Nealson K.H., Newman D., Tiedje J.M., Zhou J., Romine M.F.,
RA Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C.,
RA Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L.,
RA Kyrpides N., Mikhailova N., Richardson P.;
RT "Complete sequence of Shewanella frigidimarina NCIMB 400.";
RL Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: This is 1 of the proteins that binds and probably
CC mediates the attachment of the 5S RNA into the large ribosomal
CC subunit, where it forms part of the central protuberance. In the
CC 70S ribosome it contacts protein S13 of the 30S subunit (bridge
CC B1b), connecting the 2 subunits; this bridge is implicated in
CC subunit movement. Contacts the P site tRNA; the 5S rRNA and some
CC of its associated proteins might help stabilize positioning of
CC ribosome-bound tRNAs (By similarity).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S
CC rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site
CC tRNA. Forms a bridge to the 30S subunit in the 70S ribosome (By
CC similarity).
CC -!- SIMILARITY: Belongs to the ribosomal protein L5P family.
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DR EMBL; CP000447; ABI70023.1; -; Genomic_DNA.
DR RefSeq; YP_748861.1; NC_008345.1.
DR ProteinModelPortal; Q089P2; -.
DR SMR; Q089P2; 2-179.
DR STRING; 318167.Sfri_0160; -.
DR EnsemblBacteria; ABI70023; ABI70023; Sfri_0160.
DR GeneID; 4277230; -.
DR KEGG; sfr:Sfri_0160; -.
DR PATRIC; 23494067; VBISheFri14343_0168.
DR eggNOG; COG0094; -.
DR HOGENOM; HOG000231311; -.
DR KO; K02931; -.
DR OMA; EQVMFHE; -.
DR ProtClustDB; PRK00010; -.
DR BioCyc; SFRI318167:GIXS-172-MONOMER; -.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:HAMAP.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0000049; F:tRNA binding; IEA:HAMAP.
DR GO; GO:0006412; P:translation; IEA:HAMAP.
DR Gene3D; 3.30.1440.10; -; 1.
DR HAMAP; MF_01333_B; Ribosomal_L5_B; 1; -.
DR InterPro; IPR002132; Ribosomal_L5.
DR InterPro; IPR020930; Ribosomal_L5_bac-type.
DR InterPro; IPR020929; Ribosomal_L5_CS.
DR InterPro; IPR022803; Ribosomal_L5_domain.
DR PANTHER; PTHR11994; PTHR11994; 1.
DR Pfam; PF00281; Ribosomal_L5; 1.
DR Pfam; PF00673; Ribosomal_L5_C; 1.
DR PIRSF; PIRSF002161; Ribosomal_L5; 1.
DR SUPFAM; SSF55282; Ribosomal_L5; 1.
DR PROSITE; PS00358; RIBOSOMAL_L5; 1.
PE 3: Inferred from homology;
KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding; tRNA-binding.
FT CHAIN 1 179 50S ribosomal protein L5.
FT /FTId=PRO_1000052823.
SQ SEQUENCE 179 AA; 20243 MW; 186E1495C9E7A605 CRC64;
MAKLHDKYQE TVVAELAKKF GYSSVMQVPR IEKITLNMGV GEAVADKKVM EHALRDMTAI
AGQKPIVTVA RKSVAGFKIR EGYPIGCKVT LRGERMWEFL ERLVDIAIPR IRDFRGLSAK
AFDGRGNYAM GVREQIIFPE IDYDKIDKIR GMDIVITTTA KNDEEGRALL DAFNFPFKK
//
