ID RPOC_HAES1 Reviewed; 1420 AA.
AC Q0I5B8;
DT 04-NOV-2008, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 01-MAY-2013, entry version 54.
DE RecName: Full=DNA-directed RNA polymerase subunit beta';
DE Short=RNAP subunit beta';
DE EC=2.7.7.6;
DE AltName: Full=RNA polymerase subunit beta';
DE AltName: Full=Transcriptase subunit beta';
GN Name=rpoC; OrderedLocusNames=HS_1564;
OS Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt)).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
OC Pasteurellaceae; Histophilus.
OX NCBI_TaxID=205914;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=129Pt;
RX PubMed=17172329; DOI=10.1128/JB.01422-06;
RA Challacombe J.F., Duncan A.J., Brettin T.S., Bruce D., Chertkov O.,
RA Detter J.C., Han C.S., Misra M., Richardson P., Tapia R., Thayer N.,
RA Xie G., Inzana T.J.;
RT "Complete genome sequence of Haemophilus somnus (Histophilus somni)
RT strain 129Pt and comparison to Haemophilus ducreyi 35000HP and
RT Haemophilus influenzae Rd.";
RL J. Bacteriol. 189:1890-1898(2007).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
CC of DNA into RNA using the four ribonucleoside triphosphates as
CC substrates (By similarity).
CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
CC + RNA(n+1).
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1
CC beta' and 1 omega subunit. When a sigma factor is associated with
CC the core the holoenzyme is formed, which can initiate
CC transcription (By similarity).
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
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DR EMBL; CP000436; ABI25832.1; -; Genomic_DNA.
DR RefSeq; YP_719769.1; NC_008309.1.
DR ProteinModelPortal; Q0I5B8; -.
DR SMR; Q0I5B8; 909-943, 945-1129.
DR STRING; 205914.HS_1564; -.
DR PRIDE; Q0I5B8; -.
DR EnsemblBacteria; ABI25832; ABI25832; HS_1564.
DR GeneID; 4241085; -.
DR KEGG; hso:HS_1564; -.
DR PATRIC; 20283269; VBIHaeSom53361_1641.
DR eggNOG; COG0086; -.
DR HOGENOM; HOG000218386; -.
DR KO; K03046; -.
DR OMA; DINDKHI; -.
DR ProtClustDB; PRK00566; -.
DR BioCyc; HSOM205914:GJ7V-1635-MONOMER; -.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.
DR Gene3D; 2.40.40.20; -; 2.
DR HAMAP; MF_01322; RNApol_bact_RpoC; 1; -.
DR InterPro; IPR009010; Asp_de-COase-like_dom.
DR InterPro; IPR012754; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR TIGRFAMs; TIGR02386; rpoC_TIGR; 1.
PE 3: Inferred from homology;
KW Complete proteome; DNA-directed RNA polymerase;
KW Nucleotidyltransferase; Transcription; Transferase.
FT CHAIN 1 1420 DNA-directed RNA polymerase subunit
FT beta'.
FT /FTId=PRO_0000353379.
SQ SEQUENCE 1420 AA; 157931 MW; 6235D87B847E1FFB CRC64;
MKDLVKFLKA QSKTSEDFDV IKIGLASPDM IRSWSYGEVK KPETINYRTF KPERDGLFCA
RIFGPVKDYE CLCGKYKRLK HRGVICEKCG VEVTQAKVRR ERMGHIELAS PVAHIWFLKS
LPSRIGLLLD MPLRDIERVL YFESYIVIEP GMTDLERGQL LTEEQFLDAE DRWQDEFDAK
MGAEAIQALL RDMDLEVECE TLREELQSTN SETKRKKITK RLKLLESFIQ SGNKPEWMVM
TVLPVLPPDL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLDLIAPD IIVRNEKRML
QESVDALLDN GRRGRAITGS NRRPLKSLAD MIKGKQGRFR QNLLGKRVDY SGRSVITVGP
YLHLHQCGLP KKMALELFRP FIYAKLESRG FATTIKAAKK MVEREDAIVW DILADVIREH
PILLNRAPTL HRLGIQAFEP ILIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLTLEAQLE
ARALMMSTNN ILSPANGEPI IVPSQDVVLG LYYMTRDKVN GKGEGMLLQD SREAEKAYRT
GQAELHSRVK VRITEYVKNA IGEFEPQTHL VDTTIGRAIL WMIAPKGMPF SLFNQTLGKK
AISKLINESY RRLGLKESVL FADHIMYTGF AYAARSGSSV GIDDMVIPQK KYEIISAAEE
EVAEIQEQFQ SGLVTAGERY NKVIDIWAAA NERVAKAMME NLSQEEVINR EGQPEKQASF
NSIFMMADSG ARGSAAQIRQ LAGMRGLMAR PDGSIIETPI TANFREGLNV LQYFISTHGA
RKGLADTALK TANSGYLTRR LVDVAQDLVI IEDDCGTHEG IVMTPLIEGG DVKEALRDRV
LGRVAAEDIL KPGTNEVLIS RNTLLDEKLC DVIDENSVDS IKVRSVVTCD TDFGVCAKCY
GRDLARGHLI NQGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASAAAKESS VQVKNTGTLR
LTNVKFVTNK EGKLVLTSRN TELTIIDTFG RTKEHYKVPY GAVLNHADGE EVTAGETVAN
WDPHTMPVIS EVSGFVKFVE IVDGLTVTRQ TDELTGLSSI VVQDVGERAT AGKDLRPALK
LVDAQGNDIF IPGTDVMAQY FLPGKAIVTL DDGAEVFVGE PLARIPQESV GTKDITGGLP
RVADLFEARK PKEPAILAEI SGIVSFGKET KGKRRLLITP MEGETYEEMI PKWRQLNVFE
GELVQRGDLI SDGAETPHDI LRLRGVHAVT DYIVNEVQEV YRLQGVKIND KHIEVIVRQM
LRKAIITNAY DSEFLEGEQV EVARVKIVNR KRAEEGKPLV EFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGFAYHQNRQ KNRLVGGMEN
TTEVKLSAVD EEEIASEFTF SAEDATANLA EMLNMADDAE
//
