ID Q10EV5_ORYSJ Unreviewed; 1375 AA.
AC Q10EV5;
DT 22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 1.
DT 27-MAR-2024, entry version 73.
DE SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABF98317.1};
GN OrderedLocusNames=LOC_Os03g48674 {ECO:0000313|EMBL:ABF98317.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABF98317.1};
RN [1] {ECO:0000313|EMBL:ABF98317.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG Rice Chromosome 3 Sequencing Consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S., Luo M.,
RA Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G.,
RA Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2] {ECO:0000313|EMBL:ABF98317.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000009; ABF98317.1; -; Genomic_DNA.
DR iPTMnet; Q10EV5; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
FT DOMAIN 1268..1375
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 47..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 300..333
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 509..570
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 779..799
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 47..83
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 509..536
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1375 AA; 153158 MW; 608D32C93FDC165F CRC64;
MSSSFVDNSV NTNLNQGVPI STMLVWTQVG EIVFPVYTTV PISAGPSMTG SENAVATTQD
DSMSKDPPAK AENGTSTTSE PEKDPSAAKP CLSYKNHEPM RMTSEVTRSW CPIHKTRKHT
LQACWVFLNV YAKIRAYKEC GIQRTSPTRD VYCPIHKTKN HDLSSFKVFL SAMKTSPPKV
QQSCIPLRDE DKEQGATLIS DRFVGVIDID PHEPSVLHLL EDYGSSSTST PREVLAIDGT
STSARANAEA ENQVTTPAQH IRAINAILRE TPYDPVLNDD LARWIERLRE SVTNLSNAFE
EATTAAHPEQ PPTGDRHPRR TYDRRQPTAP SAGCRAFSRS LRDVRWPERF RPGAIEKYDG
STNPEEFLQV YSTVLYAAGA DDSALVNYLP TALKGSARSW LMHLPPYSIS LWADLWQQFV
ANFQGTYKRH AIEDDLHALT QNPGESLSDY VWRFNECRNT IPEITDASVI RAFKSGVRDR
YTTQELATRR VTTTRRLFEI VDRCAHTDDA LRRNNDKPKT GGEKKPAKDA PESSKKKNRK
SGKRKAQAEV LTTEYADPPK RLDPQGSDTK KTWCPIHKSD RHSLEDCLVF KKSLAKHMAL
EKGKRGAAPK MKWSEQKIEF SEEDHPKTAV ILGRYPIVVE PTIRNIKVTR VLIDGGSSIN
LLFAITLDAM GIPRSELTPT DQPFHGITPQ SSSKPLGKIT LPVTFGQANN FRTEQITFDV
AEFNTTYNAI IGRTALAKFM AASHYAYQVL KMPGLKGTIT IQGNAKLAVQ CDKRSLDMVE
HTPSPPTTAE PPKKRFAPDQ KQAIREELDK LLKAGFIREV LHPEWLANPV MVRKANGKWR
MCVDFTDLNK ACPKDHFPLP RIDQLVDSTA GCELLSFLDA YSGYHQISMA KEDEEKTTFI
TPFGVFCYVK MPLGLITAGN TFQRTKYTFG IPSGKLLGFL VSGRGIEANP KKIKAIENMK
SPTRLKEVQK LTGCMAVIIR SDNQIDNEMW TMAFDGALNI QGAGAGFILT SPSEDQFKHA
IHLNFRATNN TAEYEGLLAG IRAAATLGVK RLVCSSPELS KYLAEVRKLE KSFDGIGVQH
VYRKDNIEPD GLARRASRRE PLEPGTFLDV LTRPSVKEAS GEDSPVALNN SSGATEADRA
VADIKTTDDW RTPLIKFIGS EELPEDAAEA EKITRKAKIY CMIGNDLYKK APNGVLLKCV
SSDDGRHLLL DIHEGICGSH AAGRTLVGKA FRQEFFWPTT LKDACDMVQR CEACQFHSKH
TRLPAQALQT IPLTWPFSCW GLDILGPFPR GQGGYRFLFV AIDKFAKWIE ATPTGEIKAY
NAIKFIKGIF CRFGLPHRII TDNGSQFISA DFQDYCIRLG VKICFASVSH PQSNG
//
