ID Q10P06_ORYSJ Unreviewed; 977 AA.
AC Q10P06;
DT 22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE SubName: Full=Transposon protein, putative, unclassified {ECO:0000313|EMBL:ABF94998.1};
GN OrderedLocusNames=LOC_Os03g14760 {ECO:0000313|EMBL:ABF94998.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABF94998.1};
RN [1] {ECO:0000313|EMBL:ABF94998.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG Rice Chromosome 3 Sequencing Consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S., Luo M.,
RA Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G.,
RA Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2] {ECO:0000313|EMBL:ABF94998.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000009; ABF94998.1; -; Genomic_DNA.
DR AlphaFoldDB; Q10P06; -.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50879; RNASE_H_1; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 1..162
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 386..515
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT DOMAIN 685..863
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 977 AA; 110395 MW; 1AAC97F5A93E42AC CRC64;
MVRKANGKWR MCVDFTDLNK ACPKDHFPLP RIDQLVDSTA GCELLSFLDA YSSYHQISMA
KEDEEKTAFI MPFGVFCYVK MPFGLITAGD TFQRTVQGAL SNQLGNNVEA YVDDIVVKTK
TGDSLIDDLR ETFDNLRRYR LMLNPEKCTF GVPSGKLLGF LVSGRGIEAN PEKIKAIENM
KSPTRLKEVQ KLTRCMAALS RFIARMGERG QPFFALLKKQ DKFVWTQKAE EAFIALKRYL
SNPLVLVAPQ PNEELFLYIS ATPHSVSTVI VVEREKVQRP VYYISEALHD AKTRYPQIQK
LLYAVIMTSR KLRHYFQAHR LTVVSSFPFG EVVRNKDVVD RIAKWVVELS QFDVHFVPQT
TIKSQVLTDF VADWTMPDNK SDNQGDNATG TMAFDGALNS QGAGAGFILT SPSGDQFKHA
IHLNFRATNN TAEYEGLLAG IRAAATLGAK RLIVKGDSEL VANQVHKDYK CSNPKLSKYL
AEVRKLEKKF DGIEVRHAYR KDNVEPDDLA RRASRRESLE PGTFLDIVTK PSVKEVSSEV
SPNTPDISSD ITEAERAVAD IETIDDWRIP LIKFISSEEL PEDDTEAEKI TRKAKIYCMV
GNDLYKKAPN GVLLKCVSTD DGRHLLLDIH EGICGSHAAG RTLVGKAFRQ GFFWPTALKD
ACDMVQRCES CQFHSKHTKL PTQALQTIPL TWPFSCWGLD ILGPFPRGQG DYRFLFVAID
KFTKWIEAVP TGEIKADNAI KFIKGIFCGY GLPYRIITDN GSQFISADFQ DYCIGLGVKI
CFASVSHPQS NGQVERANGI VLQGMKTRVY DRLMSHDKRW VEELPSVLWA VRTTPTTSNK
ETPFFLVHGS KAMLPGELQH QSTRVQKYSD ENQEGQQDID VNLLEEHRER VAVRAASYQQ
TLRRYHEKRI RARILSIGDY VLRRVQSQAG RNKLSPKWEG PYTITQVLRP GAFKIADGDG
RELANSWNID QLRKFYV
//
