ID Q16BJ8_ROSDO Unreviewed; 493 AA.
AC Q16BJ8;
DT 25-JUL-2006, integrated into UniProtKB/TrEMBL.
DT 25-JUL-2006, sequence version 1.
DT 27-MAR-2024, entry version 110.
DE SubName: Full=Transcriptional regulator, gntR family, putative {ECO:0000313|EMBL:ABG30645.1};
GN OrderedLocusNames=RD1_0978 {ECO:0000313|EMBL:ABG30645.1};
OS Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp.
OS (strain OCh 114)) (Roseobacter denitrificans).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Roseobacter.
OX NCBI_TaxID=375451 {ECO:0000313|EMBL:ABG30645.1, ECO:0000313|Proteomes:UP000007029};
RN [1] {ECO:0000313|EMBL:ABG30645.1, ECO:0000313|Proteomes:UP000007029}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 33942 / OCh 114 {ECO:0000313|Proteomes:UP000007029};
RX PubMed=17098896; DOI=10.1128/JB.01390-06;
RA Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H.,
RA Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K.,
RA O'huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T.,
RA Touchman J.W.;
RT "The complete genome sequence of Roseobacter denitrificans reveals a
RT mixotrophic rather than photosynthetic metabolism.";
RL J. Bacteriol. 189:683-690(2007).
CC -!- SIMILARITY: In the C-terminal section; belongs to the class-I
CC pyridoxal-phosphate-dependent aminotransferase family.
CC {ECO:0000256|ARBA:ARBA00005384}.
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DR EMBL; CP000362; ABG30645.1; -; Genomic_DNA.
DR RefSeq; WP_011567267.1; NZ_FOOO01000009.1.
DR AlphaFoldDB; Q16BJ8; -.
DR STRING; 375451.RD1_0978; -.
DR KEGG; rde:RD1_0978; -.
DR eggNOG; COG1167; Bacteria.
DR HOGENOM; CLU_017584_0_1_5; -.
DR OrthoDB; 9808770at2; -.
DR Proteomes; UP000007029; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro.
DR CDD; cd00609; AAT_like; 1.
DR CDD; cd07377; WHTH_GntR; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR004839; Aminotransferase_I/II.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR000524; Tscrpt_reg_HTH_GntR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR46577; HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR; 1.
DR PANTHER; PTHR46577:SF1; HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR; 1.
DR Pfam; PF00155; Aminotran_1_2; 1.
DR Pfam; PF00392; GntR; 1.
DR SMART; SM00345; HTH_GNTR; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50949; HTH_GNTR; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898};
KW Reference proteome {ECO:0000313|Proteomes:UP000007029};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 16..84
FT /note="HTH gntR-type"
FT /evidence="ECO:0000259|PROSITE:PS50949"
SQ SEQUENCE 493 AA; 54813 MW; 5DE01B226ED1CD37 CRC64;
MALPVETFFL HPDAQGTLQS QIQQMIAQGI LSGRFQRAEK LPSTRRLAAH LGVSRITVTI
AYTELLANDY LVSRGRSGYY VSDNAPVPPA FAPGPTRTDA VDWTRAIGQR FSGGDTVRKP
PDWESYRFPF IYGQADPALF DHANWRLCAL KALGQKDFTA LTTDYYDQDD PQLIEFIARH
TLPRRGIAAR PEQVLITLGA QNALWLTTQV LLTQRRRAAL EDPCYHALRD ILSQSRCHVT
PVRLDADGLP PDAIPPDADV IFTTPSHQCP TTGTMPMARR HDLLKRAAEM DAIIVEDDYE
FEMSFLKSPS PALKSLDADG RVIYVGSFSK SLFPGLRLGY LVGSEPFIRE ARALRASVLR
HPPGHIQRTA AYFLSLGHHD ALIRRMGATL HERRQVMSDA IAQNRLQIAG QGAHGGSSFW
MRAPENIDTQ DLARRLRARD VLIEPGHSFF AGAAQPRNFY RLAYSSIPAS RILQGVSRVA
EEINTLSNLA LNG
//
