ID Q1GJU3_RUEST Unreviewed; 359 AA.
AC Q1GJU3;
DT 27-JUN-2006, integrated into UniProtKB/TrEMBL.
DT 27-JUN-2006, sequence version 1.
DT 27-MAR-2024, entry version 94.
DE SubName: Full=Peptidoglycan-binding LysM {ECO:0000313|EMBL:ABF63073.1};
GN OrderedLocusNames=TM1040_0340 {ECO:0000313|EMBL:ABF63073.1};
OS Ruegeria sp. (strain TM1040) (Silicibacter sp.).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=292414 {ECO:0000313|EMBL:ABF63073.1, ECO:0000313|Proteomes:UP000000636};
RN [1] {ECO:0000313|Proteomes:UP000000636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TM1040 {ECO:0000313|Proteomes:UP000000636};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S.,
RA Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F.,
RA Richardson P.;
RT "Complete sequence of chromosome of Silicibacter sp. TM1040.";
RL Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABF63073.1, ECO:0000313|Proteomes:UP000000636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TM1040 {ECO:0000313|EMBL:ABF63073.1,
RC ECO:0000313|Proteomes:UP000000636};
RX PubMed=17526795; DOI=10.1128/AEM.02580-06;
RA Moran M.A., Belas R., Schell M.A., Gonzalez J.M., Sun F., Sun S.,
RA Binder B.J., Edmonds J., Ye W., Orcutt B., Howard E.C., Meile C.,
RA Palefsky W., Goesmann A., Ren Q., Paulsen I., Ulrich L.E., Thompson L.S.,
RA Saunders E., Buchan A.;
RT "Ecological genomics of marine Roseobacters.";
RL Appl. Environ. Microbiol. 73:4559-4569(2007).
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DR EMBL; CP000377; ABF63073.1; -; Genomic_DNA.
DR RefSeq; WP_011537688.1; NC_008044.1.
DR AlphaFoldDB; Q1GJU3; -.
DR STRING; 292414.TM1040_0340; -.
DR KEGG; sit:TM1040_0340; -.
DR eggNOG; COG0834; Bacteria.
DR eggNOG; COG1652; Bacteria.
DR HOGENOM; CLU_055592_0_0_5; -.
DR OrthoDB; 8479038at2; -.
DR Proteomes; UP000000636; Chromosome.
DR CDD; cd00118; LysM; 1.
DR Gene3D; 3.10.350.10; LysM domain; 1.
DR Gene3D; 3.40.190.10; Periplasmic binding protein-like II; 2.
DR InterPro; IPR018392; LysM_dom.
DR InterPro; IPR036779; LysM_dom_sf.
DR InterPro; IPR001638; Solute-binding_3/MltF_N.
DR Pfam; PF00497; SBP_bac_3; 1.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR PROSITE; PS51782; LYSM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000636};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..21
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 22..359
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5004189262"
FT DOMAIN 27..77
FT /note="LysM"
FT /evidence="ECO:0000259|PROSITE:PS51782"
SQ SEQUENCE 359 AA; 38959 MW; 9F8E889C5D5A5538 CRC64;
MRRLIAAAVL GVSALWAQAS AAQTCGGMYT VQPGDSLSVI ADRLYKNAGM WTAIHNRNIA
AIGPKPGSIR VGMRLEITCL NGLPVGLEGG RALSASAPTE ATPVQIVAGN ATVRQKINLL
TGDDFEPFTG KSLHNGGLLT DLVNAAMTEA NPAQGFAIHW VDHWAAHFDP LLSNALLDIG
FPWYKPNCAE LPDNYRCQNL LFSDPLFETL TLMFADAARP VSFGSDEDLY GKSICRPKGY
DTSIFNENGR NWLREDKITL VVGATPGDCF DMVLEGKADG VVLNEFTGRD KMKEMGIVER
IQVVPQPISI QSHHVVVHKS HPQAQELLAI VNTGLRGIRE DGSYQAIVED HLARVWAGF
//
