ID Q1IRM1_KORVE Unreviewed; 302 AA.
AC Q1IRM1;
DT 13-JUN-2006, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2006, sequence version 1.
DT 27-MAR-2024, entry version 98.
DE SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABF40479.1};
GN OrderedLocusNames=Acid345_1477 {ECO:0000313|EMBL:ABF40479.1};
OS Koribacter versatilis (strain Ellin345).
OC Bacteria; Acidobacteriota; Terriglobia; Terriglobales; Acidobacteriaceae;
OC Koribacter.
OX NCBI_TaxID=204669 {ECO:0000313|EMBL:ABF40479.1, ECO:0000313|Proteomes:UP000002432};
RN [1] {ECO:0000313|EMBL:ABF40479.1, ECO:0000313|Proteomes:UP000002432}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Ellin345 {ECO:0000313|EMBL:ABF40479.1,
RC ECO:0000313|Proteomes:UP000002432};
RX PubMed=19201974; DOI=10.1128/AEM.02294-08;
RA Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M.,
RA Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B.,
RA Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C.,
RA Davidsen T.M., DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S.,
RA Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P.,
RA Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q.,
RA Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R.,
RA Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R.;
RT "Three genomes from the phylum Acidobacteria provide insight into the
RT lifestyles of these microorganisms in soils.";
RL Appl. Environ. Microbiol. 75:2046-2056(2009).
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00009437}.
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DR EMBL; CP000360; ABF40479.1; -; Genomic_DNA.
DR RefSeq; WP_011522281.1; NC_008009.1.
DR AlphaFoldDB; Q1IRM1; -.
DR STRING; 204669.Acid345_1477; -.
DR EnsemblBacteria; ABF40479; ABF40479; Acid345_1477.
DR KEGG; aba:Acid345_1477; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_6_1_0; -.
DR OrthoDB; 9803735at2; -.
DR Proteomes; UP000002432; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd05466; PBP2_LTTR_substrate; 1.
DR Gene3D; 3.40.190.290; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30126; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR30126:SF39; RUBISCO TRANSCRIPTIONAL REGULATOR-RELATED; 1.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR PRINTS; PR00039; HTHLYSR.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002432};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 1..58
FT /note="HTH lysR-type"
FT /evidence="ECO:0000259|PROSITE:PS50931"
SQ SEQUENCE 302 AA; 34073 MW; D4FE89FC5ECA429F CRC64;
MDFDQLLTFL EVAKLGNFSR AGEKVYRSQS AVSAQIRQLE QEYGERLFDR SGKIVRLSPA
GEVLLEYAQR MVALRNESLR AVADQGETPR GVLSIGANEA TCLYVLPDIF TEYCQQFPQV
QITVYRNFSR KILQAVEDGV IDLGIATLPV KSPSLKVHPI FRDRLELMVP VRHPLAAKES
VTIEEIAEYP QIFPKTGYTR QQLDKLFRPY NSKLRVAMEI PSVGLIKSFV VSGVGVTLLS
STFAQDEVRA GKAKMLPIAG VDMWRELGLI YRNDRTLPRS ATAFIDLMRH RPVAKKSKSH
RM
//
