ID   Q1LSR0_BAUCH            Unreviewed;       749 AA.
AC   Q1LSR0;
DT   30-MAY-2006, integrated into UniProtKB/TrEMBL.
DT   30-MAY-2006, sequence version 1.
DT   13-NOV-2013, entry version 58.
DE   RecName: Full=Ribonuclease R;
DE            Short=RNase R;
DE            EC=3.1.13.1;
GN   Name=rnr; OrderedLocusNames=BCI_0576;
OS   Baumannia cicadellinicola subsp. Homalodisca coagulata.
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Candidatus Baumannia.
OX   NCBI_TaxID=374463;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16729848; DOI=10.1371/journal.pbio.0040188;
RA   Wu D., Daugherty S.C., Van Aken S.E., Pai G.H., Watkins K.L.,
RA   Khouri H., Tallon L.J., Zaborsky J.M., Dunbar H.E., Tran P.L.,
RA   Moran N.A., Eisen J.A.;
RT   "Metabolic complementarity and genomics of the dual bacterial
RT   symbiosis of sharpshooters.";
RL   PLoS Biol. 4:1079-1092(2006).
CC   -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside
CC       monophosphates and is involved in maturation of structured RNAs
CC       (By similarity).
CC   -!- CATALYTIC ACTIVITY: Exonucleolytic cleavage in the 3'- to 5'-
CC       direction to yield nucleoside 5'-phosphates.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm (By similarity).
CC   -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R
CC       subfamily.
CC   -!- SIMILARITY: Contains 1 S1 motif domain.
CC   -!- SIMILARITY: Contains S1 motif domain.
CC   -!- SIMILARITY: Contains Smotif domain.
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DR   EMBL; CP000238; ABF13946.1; -; Genomic_DNA.
DR   RefSeq; YP_589004.1; NC_007984.1.
DR   ProteinModelPortal; Q1LSR0; -.
DR   STRING; 374463.BCI_0576; -.
DR   EnsemblBacteria; ABF13946; ABF13946; BCI_0576.
DR   GeneID; 4056692; -.
DR   KEGG; bci:BCI_0576; -.
DR   PATRIC; 21074659; VBIBauCic75062_0546.
DR   eggNOG; COG0557; -.
DR   HOGENOM; HOG000071120; -.
DR   KO; K12573; -.
DR   OMA; GFFVRLN; -.
DR   OrthoDB; EOG6Q5NRD; -.
DR   BioCyc; BCIC374463:GI6Q-576-MONOMER; -.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0090305; P:nucleic acid phosphodiester bond hydrolysis; IEA:GOC.
DR   GO; GO:0016070; P:RNA metabolic process; IEA:UniProtKB-HAMAP.
DR   Gene3D; 2.40.50.140; -; 1.
DR   HAMAP; MF_01895; RNase_R; 1; -.
DR   InterPro; IPR011129; Cold_shock_prot.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR003029; Rbsml_prot_S1_RNA-bd_dom.
DR   InterPro; IPR022967; RNA-binding_domain_S1.
DR   InterPro; IPR013223; RNase_B_OB_dom.
DR   InterPro; IPR001900; RNase_II/R.
DR   InterPro; IPR022966; RNase_II/R_CS.
DR   InterPro; IPR004476; RNase_II/RNase_R.
DR   InterPro; IPR011805; RNase_R.
DR   InterPro; IPR013668; RNase_R_HTH_12.
DR   Pfam; PF08461; HTH_12; 1.
DR   Pfam; PF08206; OB_RNB; 1.
DR   Pfam; PF00773; RNB; 1.
DR   Pfam; PF00575; S1; 1.
DR   SMART; SM00357; CSP; 1.
DR   SMART; SM00955; RNB; 1.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF50249; SSF50249; 4.
DR   TIGRFAMs; TIGR00358; 3_prime_RNase; 1.
DR   TIGRFAMs; TIGR02063; RNase_R; 1.
DR   PROSITE; PS01175; RIBONUCLEASE_II; 1.
DR   PROSITE; PS50126; S1; 1.
PE   3: Inferred from homology;
KW   Complete proteome; Cytoplasm; Exonuclease; Hydrolase; Nuclease;
KW   RNA-binding.
FT   DOMAIN      646    727       S1 motif (By similarity).
SQ   SEQUENCE   749 AA;  85697 MW;  AC78E0B7C150FD0F CRC64;
     MSKNPFLAHN TEKYKCPIPS RELILIHLAK REVPISSKDL ALELNVCGAE QLDGLRRRLR
     AMKRDGQLTF THRQYSILPT DNNLLRGTVI GHRDGFGFLR VSGRKEDLYL SVEQMKIVIH
     GDIVIAALSQ GEHYNKGRRE ARIIRVLIPK NQPIVGKFYV DTNRAFVVPD DSRLSFKIII
     PPADRNNADV GCLVVVQLIQ RPNRNIKAIG KIVEVLGDHI NTSMVVDIAL RSYALPYIWP
     PEVEEQAATF TKEVPEVVKR SRVDLRMLPL VTIDGEEARD FDDAVYCEKK SSGWRLWVAI
     ADVSYYVRPH TPLDNEARNR ATSIYFPSQV IPMLPEILSH SLCSLNPQVD RLCMVCEMTI
     SAQGKLSSYK FYEAIINSKA RLTYNNVWQI LQGNQQLCTY YAQLVQPLNN LHTMSLKLEQ
     ARIQRGGISF DTEETQFIFN AEQRIERIEL VVRNEAHKLI EECMILANIA AARFIEKNKE
     PALYRVHDRP SNDNITLLRA ILGKRGLNLG GGDQPQPKDY AEIMSVVSRR TDYEMLRTML
     LRSMKQAIYD PENRGHFGLA LQAYTHFTSP IRRYSDLVLH RAIKYLLGRQ NGKANGRSTP
     SGGWHSELKE MLQIGQHCSM NERRADEATR NVTDWLKCDF MQEHVGEVFY GTIANITCFG
     FFVRINGLFI DGLVHISSLE NDYYRYDNVN QLLIGESGGK IYRIGDTVGI RVEAIHMSDR
     KINFSLISTR QYHHKNNHQI SSNKLFVRS
//