ID Q215Q8_RHOPB Unreviewed; 306 AA.
AC Q215Q8;
DT 18-APR-2006, integrated into UniProtKB/TrEMBL.
DT 18-APR-2006, sequence version 1.
DT 27-MAR-2024, entry version 96.
DE SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD87878.1};
GN OrderedLocusNames=RPC_2324 {ECO:0000313|EMBL:ABD87878.1};
OS Rhodopseudomonas palustris (strain BisB18).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Rhodopseudomonas.
OX NCBI_TaxID=316056 {ECO:0000313|EMBL:ABD87878.1};
RN [1] {ECO:0000313|EMBL:ABD87878.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BisB18 {ECO:0000313|EMBL:ABD87878.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.,
RA Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S.,
RA Richardson P.;
RT "Complete sequence of Rhodopseudomonas palustris BisB18.";
RL Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: NodD regulates the expression of the nodABCFE genes which
CC encode other nodulation proteins. NodD is also a negative regulator of
CC its own expression. Binds flavonoids as inducers.
CC {ECO:0000256|ARBA:ARBA00003502}.
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00009437}.
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DR EMBL; CP000301; ABD87878.1; -; Genomic_DNA.
DR AlphaFoldDB; Q215Q8; -.
DR STRING; 316056.RPC_2324; -.
DR KEGG; rpc:RPC_2324; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_35_0_5; -.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR Gene3D; 3.40.190.290; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30126; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR30126:SF40; HTH-TYPE TRANSCRIPTIONAL REGULATOR GLTR; 1.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR PRINTS; PR00039; HTHLYSR.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 5..62
FT /note="HTH lysR-type"
FT /evidence="ECO:0000259|PROSITE:PS50931"
SQ SEQUENCE 306 AA; 32967 MW; D7C82DD8D3A5F91C CRC64;
MSDALTLDQI QLLLAVVDHG SFSGAARKLN RAQSAVTYGI QKLEAQLGVA LFDRSSYRPS
LTEAGRALLP RARRIVDETA ALRDQAQGLA GGLEAELTLV IDAMFPMPRL VEALRAFTAK
FPTVPPRIYV QSMGAGTEFV LNGTCMIGLL SMVFSDTAGL QHVPLLTVQL LPVVAQDHPL
AQLDGPIPTD VIRRHLQLVL TDRSALTEGR DYGVLSSQTW RVADLGTKHA MLLAGLGWGS
MPTHLVADDV RDGRLKVIHP AEFDARTAHL VMGAAHLASR PLGPAALWMM RHFFETAAEE
AGGATQ
//
