ID Q2JVB9_SYNJA Unreviewed; 423 AA.
AC Q2JVB9;
DT 07-MAR-2006, integrated into UniProtKB/TrEMBL.
DT 07-MAR-2006, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE SubName: Full=ISSoc3, orfB transposase {ECO:0000313|EMBL:ABC99324.1};
GN OrderedLocusNames=CYA_1136 {ECO:0000313|EMBL:ABC99324.1};
OS Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone
OS A-Prime).
OC Bacteria; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae;
OC Synechococcus.
OX NCBI_TaxID=321327 {ECO:0000313|EMBL:ABC99324.1, ECO:0000313|Proteomes:UP000008818};
RN [1] {ECO:0000313|EMBL:ABC99324.1, ECO:0000313|Proteomes:UP000008818}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JA-3-3Ab {ECO:0000313|EMBL:ABC99324.1,
RC ECO:0000313|Proteomes:UP000008818};
RX PubMed=18059494; DOI=10.1038/ismej.2007.46;
RA Bhaya D., Grossman A.R., Steunou A.S., Khuri N., Cohan F.M., Hamamura N.,
RA Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.;
RT "Population level functional diversity in a microbial community revealed by
RT comparative genomic and metagenomic analyses.";
RL ISME J. 1:703-713(2007).
CC -!- SIMILARITY: In the C-terminal section; belongs to the transposase 35
CC family. {ECO:0000256|ARBA:ARBA00008761}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the transposase 2
CC family. {ECO:0000256|ARBA:ARBA00011044}.
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DR EMBL; CP000239; ABC99324.1; -; Genomic_DNA.
DR RefSeq; WP_011430005.1; NC_007775.1.
DR AlphaFoldDB; Q2JVB9; -.
DR STRING; 321327.CYA_1136; -.
DR KEGG; cya:CYA_1136; -.
DR eggNOG; COG0675; Bacteria.
DR HOGENOM; CLU_032903_0_1_3; -.
DR OrthoDB; 551605at2; -.
DR Proteomes; UP000008818; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR InterPro; IPR010095; Cas12f1-like_TNB.
DR InterPro; IPR001959; Transposase.
DR InterPro; IPR021027; Transposase_put_HTH.
DR NCBIfam; NF040570; guided_TnpB; 1.
DR PANTHER; PTHR30405:SF20; RNA-GUIDED DNA ENDONUCLEASE INSQ-RELATED; 1.
DR PANTHER; PTHR30405; TRANSPOSASE; 1.
DR Pfam; PF12323; HTH_OrfB_IS605; 1.
DR Pfam; PF01385; OrfB_IS605; 1.
DR Pfam; PF07282; OrfB_Zn_ribbon; 1.
PE 3: Inferred from homology;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Transposition {ECO:0000256|ARBA:ARBA00022578};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 1..44
FT /note="Transposase putative helix-turn-helix"
FT /evidence="ECO:0000259|Pfam:PF12323"
FT DOMAIN 188..304
FT /note="Probable transposase IS891/IS1136/IS1341"
FT /evidence="ECO:0000259|Pfam:PF01385"
FT DOMAIN 316..383
FT /note="Cas12f1-like TNB"
FT /evidence="ECO:0000259|Pfam:PF07282"
SQ SEQUENCE 423 AA; 47926 MW; 1014625F0FD91F3E CRC64;
MIITYEYRIL PSDDQAALMT EWLELLRRQW NDALGQRLDW LTATRCPIDR CSLVSCPLPV
SEAPLEPNYY RQAGSLKQIK QLFPAYRGIY AEVLQQNLMR LDKAWKAWQV PDSTGKRRGR
PRFKKAGELR SFTFPRINCP KAGAHLEGET LRLSKIGSMP VVLHRPLPEG FVPKTCTVVR
KADGWYVCIT LEDKSVPLPE PVPVKRAVGI DVGLDRFLTT SDGEVVPIPR YYRQAQKHLA
RQQRQLSRKV KGSANWKRQA TKVACLQLHV ARQRKAFHYQ VAHWLVGQYD LLVVEDLNVR
GLARTRLAKS ILDAAWGQFL DILTAVAVKR GKQVLRVDPP GTSQNCCVCE ERVPKTLSER
VHDCPRCGSW DRDLNAAIEI LKRGLRAVGL PLSGCGGSWF TSPLKQQLRE VILGSSRLQP
VRA
//
