ID Q2QKB5_WHEAT Unreviewed; 314 AA.
AC Q2QKB5;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 24-JAN-2006, sequence version 1.
DT 27-MAR-2024, entry version 98.
DE SubName: Full=U2AF small subunit {ECO:0000313|EMBL:AAY84879.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EMBL:AAY84879.1};
RN [1] {ECO:0000313|EMBL:AAY84879.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Grain treated with 0-6 DAP {ECO:0000313|EMBL:AAY84879.1};
RX PubMed=16941218; DOI=10.1007/s11103-006-9046-6;
RA Lopato S., Borisjuk L., Milligan A.S., Shirley N., Bazanova N.,
RA Langridge P.;
RT "Systematic identification of factors involved in post-transcriptional
RT processes in wheat grain.";
RL Plant Mol. Biol. 62:637-653(2006).
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DR EMBL; DQ019634; AAY84879.1; -; mRNA.
DR AlphaFoldDB; Q2QKB5; -.
DR SMR; Q2QKB5; -.
DR Gramene; TraesKAR5B01G0294070.1; cds.TraesKAR5B01G0294070.1; TraesKAR5B01G0294070.
DR Gramene; TraesRN5D0100659400.1; TraesRN5D0100659400.1; TraesRN5D0100659400.
DR eggNOG; KOG2202; Eukaryota.
DR OrthoDB; 1967949at2759; -.
DR ExpressionAtlas; Q2QKB5; baseline and differential.
DR GO; GO:0089701; C:U2AF complex; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd12539; RRM_U2AF35B; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR003954; RRM_dom_euk.
DR InterPro; IPR009145; U2AF_small.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR12620:SF36; SPLICING FACTOR U2AF SMALL SUBUNIT A; 1.
DR PANTHER; PTHR12620; U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 2.
DR PRINTS; PR01848; U2AUXFACTOR.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00361; RRM_1; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 12..40
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 79..146
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 148..175
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 12..40
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 148..175
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 188..314
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 188..203
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 204..259
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 267..314
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 314 AA; 36738 MW; 25C5D0642A790952 CRC64;
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SVSPTLLLCN MYQRPDMITP
GVDAQGNPID PVKIQGDFED FYEDIFDELS KHGEVENLHV CDNLADHLIG NVYVQFREED
QAAKALQALQ GRFYSGRPII AEFSPVTDFR EATCRQFEEH NCNRGGYCNF MHVKEIGRDL
RKRLYGHLHR SGRSHSRSSR SPSPYRHHAR DRDRSSRSRD RGDYYGGSLD RGDYGDYYHH
SRRSSERNRN YDSDGSRCRR HRSRTRSPVR EGSEERRAKI EQWNREREAP ARQGSEERRA
KIDQWNRERE TAQA
//
